# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yc5A	246	2.462	c.31.1.5	122910
1uu1A	335	3.629	c.67.1.1	99993
1q1aA	289	4.007	c.31.1.5	95561
1j8fA	323	6.925	c.31.1.5	62738
1tq4A	413	9.218	c.37.1.8	107201
1vk6A	269	10.19	d.113.1.4,d.113.1.4,g.41.14.1	100852,111609,111610
1l8dA	112	10.66	h.4.12.1	73687
2drpA	66	13.20	g.37.1.1,g.37.1.1	45026,45027
1ma3A	253	14.67	c.31.1.5	78883
2ctdA	96	14.87	g.37.1.1,g.37.1.1	130792,130793
1rmdA	116	17.38	g.37.1.1,g.44.1.1	45025,45322
1lv3A	68	19.35	g.39.1.9	78231
2gx9A	129	21.87	d.299.1.1	135828
3cwfA	122	24.14		
1h2iA	209	25.36	d.50.1.3	76550
2cveA	191	25.62	d.14.1.11,d.58.11.2	130869,130870
1yuiA	54	25.63	g.37.1.1	45073
1hk8A	605	27.14	c.7.1.3	83540
2qkdA	404	28.11		
2i13A	190	33.20	k.12.1.1	136964
1vqoZ	83	42.43	g.41.8.1	120387
2eloA	37	43.22		
2hnhA	910	45.86		
1vqtA	213	47.03	c.1.2.3	120417
3cngA	189	47.72		
1rutX	188	48.33	g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3	111939,111940,111941,111942
1q33A	292	48.65	d.113.1.1	95657
2c1dA	264	49.00		
1vbiA	344	53.29		
1xvhA	129	56.07	a.8.1.2,a.8.1.2	116084,116085
1a1hA	90	56.39	g.37.1.1,g.37.1.1,g.37.1.1	45004,45005,45006
2pmzP	48	58.64		
2q49A	359	59.19	c.2.1.3,d.81.1.1	139831,139832
1lkoA	191	61.73	a.25.1.1,g.41.5.1	78063,78064
2g5gX	268	65.91		
2q8uA	336	66.72		
1jx7A	117	66.77	c.114.1.1	77195
1m2kA	249	67.12	c.31.1.5	84754
1yfuA	174	67.73	b.82.1.20	123094
1a1gA	90	69.56	g.37.1.1,g.37.1.1,g.37.1.1	45010,45011,45012
2hu9A	130	70.58		
2ppwA	216	74.86		
2c5kT	95	75.08		
1qxfA	66	79.13	g.41.8.4	96527
2jrpA	81	80.19		
1a1iA	90	85.21	g.37.1.1,g.37.1.1,g.37.1.1	44998,44999,45000
1svjA	156	85.74	d.220.1.1	106049
1x8hA	228	86.09	d.157.1.1	114961