# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yc5A 246 5.608 c.31.1.5 122910 2drpA 66 6.715 g.37.1.1,g.37.1.1 45026,45027 1q1aA 289 6.798 c.31.1.5 95561 1j8fA 323 9.703 c.31.1.5 62738 1tq4A 413 11.14 c.37.1.8 107201 1uu1A 335 12.28 c.67.1.1 99993 2i13A 190 13.35 k.12.1.1 136964 1rmdA 116 13.83 g.37.1.1,g.44.1.1 45025,45322 1vk6A 269 14.86 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 2ctdA 96 17.25 g.37.1.1,g.37.1.1 130792,130793 1a1hA 90 18.21 g.37.1.1,g.37.1.1,g.37.1.1 45004,45005,45006 1a1gA 90 19.12 g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 1lv3A 68 19.33 g.39.1.9 78231 1llmC 88 20.74 g.37.1.1,g.37.1.1 91059,91060 1yuiA 54 23.65 g.37.1.1 45073 1l8dA 112 24.05 h.4.12.1 73687 1a1iA 90 24.80 g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 2fiyA 309 25.58 e.59.1.1 133540 1ma3A 253 28.21 c.31.1.5 78883 1wjpA 107 48.12 g.37.1.1,g.37.1.1,g.37.1.1 114705,114706,114707 1vqoZ 83 50.07 g.41.8.1 120387 2pmzP 48 51.29 3cwfA 122 53.43 2qkdA 404 55.28 1uacH 114 56.64 b.1.1.1 99132 2gx9A 129 59.50 d.299.1.1 135828 1uz8B 212 61.57 b.1.1.1,b.1.1.2 108168,108169 2d9kA 75 62.22 1m2kA 249 63.61 c.31.1.5 84754 3cngA 189 63.87 2eloA 37 68.66 1zsoA 164 68.66 b.166.1.1 125610 1rutX 188 71.66 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 2b4yA 271 73.57 c.31.1.5 127868 1wjvA 79 75.23 g.37.1.2,g.37.1.2 114713,114714 1hk8A 605 76.05 c.7.1.3 83540 1rmd 116 76.68 1oksA 56 79.62 a.8.5.1 93271 2c1dA 264 80.42 1xvhA 129 81.02 a.8.1.2,a.8.1.2 116084,116085 1tq6A 413 81.42 c.37.1.8 107202 1qxfA 66 82.54 g.41.8.4 96527 1oaqH 121 84.86 b.1.1.1 92707 2hu9A 130 86.37 1yfuA 174 88.49 b.82.1.20 123094 1h2iA 209 89.43 d.50.1.3 76550