# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1q33A 292 1.253 d.113.1.1 95657 2zctA 249 1.344 1rmdA 116 1.577 g.37.1.1,g.44.1.1 45025,45322 2e27H 126 2.303 2drpA 66 3.457 g.37.1.1,g.37.1.1 45026,45027 2hnhA 910 4.191 1kolA 398 4.873 b.35.1.2,c.2.1.1 77474,77475 2ctdA 96 5.479 g.37.1.1,g.37.1.1 130792,130793 2bcgG 453 6.269 c.3.1.3,c.3.1.3,d.16.1.6 128282,128283,128284 1uz8B 212 6.636 b.1.1.1,b.1.1.2 108168,108169 1l8dA 112 7.107 h.4.12.1 73687 2a77H 222 7.262 b.1.1.2 126328 1yo6A 250 7.323 c.2.1.2 123769 1zsoA 164 7.959 b.166.1.1 125610 2i13A 190 10.97 k.12.1.1 136964 1kcvH 217 12.75 b.1.1.1,b.1.1.2 72315,72316 1lv3A 68 12.80 g.39.1.9 78231 1vk6A 269 14.24 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 1cjaA 342 15.12 d.144.1.3 41708 1n0xH 230 15.90 b.1.1.1,b.1.1.2 91528,91529 1q1aA 289 16.49 c.31.1.5 95561 1h0pA 182 17.13 b.62.1.1 76450 1a1hA 90 18.23 g.37.1.1,g.37.1.1,g.37.1.1 45004,45005,45006 3cngA 189 18.51 1a1gA 90 19.25 g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 1yuiA 54 19.67 g.37.1.1 45073 1qoiA 177 20.11 b.62.1.1 27490 3bhgA 459 20.44 1xrhA 351 20.89 c.122.1.1 115871 1llmC 88 21.04 g.37.1.1,g.37.1.1 91059,91060 2qgpA 112 25.26 1rutX 188 28.65 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 2ptrA 462 30.26 1pmjX 185 30.26 b.18.1.18 104194 2r99A 173 30.71 1ncwH 222 31.05 b.1.1.1,b.1.1.2 85555,85556 2fiyA 309 31.07 e.59.1.1 133540 1wjpA 107 31.72 g.37.1.1,g.37.1.1,g.37.1.1 114705,114706,114707 1nxuA 333 33.72 c.122.1.1 86389 2i7aA 174 33.78 1r89A 437 34.21 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 2f6kA 307 34.29 c.1.9.15 133047 1oe4A 247 34.83 c.18.1.3 86895 1rzfH 235 35.03 b.1.1.1,b.1.1.2 98150,98151 2c5kT 95 35.59 3cssA 267 37.94 2cfeA 162 38.56 b.62.1.1 130375 1iyeA 309 38.70 e.17.1.1 83786 2gx9A 129 39.13 d.299.1.1 135828 2d9kA 75 40.05 1tq4A 413 40.39 c.37.1.8 107201 2cmtA 172 41.95 1h2iA 209 43.21 d.50.1.3 76550 1a6vH 120 43.50 b.1.1.1 20257 2fqhA 109 43.93 1sqsA 242 44.03 c.23.5.5 98968 1ia6A 441 44.23 a.102.1.2 76738 2f42A 179 44.69 1u8vA 490 45.41 a.29.3.1,e.6.1.1 113196,113197 1r9dA 787 45.57 c.7.1.1 104865 1z6uA 150 45.80 1xkyA 301 46.87 c.1.10.1 122094 2z6wA 165 47.34 2airB 153 49.03 d.58.2.1,g.41.7.1 126832,126833 2qkpA 151 49.14 1hzoA 271 49.64 e.3.1.1 71092 2pmzP 48 50.24 1ghpA 258 51.50 e.3.1.1 60520 1ew2A 513 52.83 c.76.1.1 59525 2gmgA 105 55.74 2eloA 37 56.35 1wdcC 156 56.45 a.39.1.5 17317 2rmcA 182 56.70 b.62.1.1 27491 2iwrA 178 58.82 2avxA 171 59.16 1rmd 116 59.35 2e84A 556 62.85 2pajA 492 64.06 1jb0A 755 64.85 f.29.1.1 62820 3cwfA 122 65.49 1c3cA 429 66.33 a.127.1.1 19425 2gnoA 305 66.49 a.80.1.1,c.37.1.20 135414,135415 1yozA 116 67.49 a.253.1.1 123796 1a1iA 90 68.37 g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 1sg6A 393 69.18 e.22.1.1 105522 1vqoZ 83 69.96 g.41.8.1 120387 2z8fA 412 69.97 2r5xA 129 71.49 1pmhX 185 71.91 b.18.1.18 104193 2jrpA 81 74.92 1oksA 56 75.28 a.8.5.1 93271 1n4xH 120 77.27 b.1.1.1 85324 2hu9A 130 79.81 1vf8A 377 80.29 c.1.8.5,d.26.3.1 120029,120030 1wjvA 79 80.82 g.37.1.2,g.37.1.2 114713,114714 1mjuH 227 81.24 b.1.1.1,b.1.1.2 91302,91303 2j6aA 141 83.85 2p71A 132 84.57 a.39.2.1 139516 1eq2A 310 85.92 c.2.1.2 29814 2gkmA 136 87.53