# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yc5A	246	8.267	c.31.1.5	122910
1q1aA	289	8.610	c.31.1.5	95561
2drpA	66	10.41	g.37.1.1,g.37.1.1	45026,45027
1uu1A	335	11.05	c.67.1.1	99993
1j8fA	323	13.25	c.31.1.5	62738
1tq4A	413	13.52	c.37.1.8	107201
1rmdA	116	16.21	g.37.1.1,g.44.1.1	45025,45322
2i13A	190	20.05	k.12.1.1	136964
2ctdA	96	22.09	g.37.1.1,g.37.1.1	130792,130793
1lv3A	68	23.13	g.39.1.9	78231
1vk6A	269	25.61	d.113.1.4,d.113.1.4,g.41.14.1	100852,111609,111610
1yuiA	54	26.26	g.37.1.1	45073
1a1hA	90	26.45	g.37.1.1,g.37.1.1,g.37.1.1	45004,45005,45006
1ma3A	253	27.52	c.31.1.5	78883
1a1gA	90	28.35	g.37.1.1,g.37.1.1,g.37.1.1	45010,45011,45012
1l8dA	112	30.14	h.4.12.1	73687
1llmC	88	35.89	g.37.1.1,g.37.1.1	91059,91060
1a1iA	90	36.14	g.37.1.1,g.37.1.1,g.37.1.1	44998,44999,45000
1h2iA	209	51.08	d.50.1.3	76550
1wjpA	107	51.12	g.37.1.1,g.37.1.1,g.37.1.1	114705,114706,114707
2fiyA	309	53.15	e.59.1.1	133540
2pmzP	48	53.46		
1vqoZ	83	63.77	g.41.8.1	120387
1xvhA	129	66.93	a.8.1.2,a.8.1.2	116084,116085
2eloA	37	67.78		
3cwfA	122	69.84		
1rutX	188	69.91	g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3	111939,111940,111941,111942
2d9kA	75	71.98		
2c5kT	95	72.44		
2hnhA	910	78.02		
1m2kA	249	78.49	c.31.1.5	84754
2f42A	179	79.33		
2c1dA	264	80.42		
1rmd	116	80.45		
2qkdA	404	81.53		
2gx9A	129	81.82	d.299.1.1	135828
2q49A	359	84.80	c.2.1.3,d.81.1.1	139831,139832
1wjvA	79	87.18	g.37.1.2,g.37.1.2	114713,114714
1oksA	56	88.27	a.8.5.1	93271
2b4yA	271	89.47	c.31.1.5	127868
1uacH	114	89.72	b.1.1.1	99132