# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1q1aA	289	3.978	c.31.1.5	95561
1j8fA	323	6.692	c.31.1.5	62738
1yc5A	246	7.273	c.31.1.5	122910
2drpA	66	8.334	g.37.1.1,g.37.1.1	45026,45027
1rmdA	116	9.95	g.37.1.1,g.44.1.1	45025,45322
1uu1A	335	12.17	c.67.1.1	99993
1vk6A	269	12.35	d.113.1.4,d.113.1.4,g.41.14.1	100852,111609,111610
2ctdA	96	14.43	g.37.1.1,g.37.1.1	130792,130793
1tq4A	413	16.72	c.37.1.8	107201
2gx9A	129	18.10	d.299.1.1	135828
1lv3A	68	19.56	g.39.1.9	78231
1l8dA	112	20.82	h.4.12.1	73687
2i13A	190	24.15	k.12.1.1	136964
1yuiA	54	27.36	g.37.1.1	45073
1ma3A	253	28.19	c.31.1.5	78883
1a1hA	90	34.58	g.37.1.1,g.37.1.1,g.37.1.1	45004,45005,45006
1a1gA	90	36.82	g.37.1.1,g.37.1.1,g.37.1.1	45010,45011,45012
2eloA	37	38.00		
1llmC	88	39.66	g.37.1.1,g.37.1.1	91059,91060
1a1iA	90	40.31	g.37.1.1,g.37.1.1,g.37.1.1	44998,44999,45000
2fiyA	309	44.52	e.59.1.1	133540
3cwfA	122	46.61		
1hk8A	605	48.32	c.7.1.3	83540
2d9kA	75	48.88		
2pmzP	48	50.19		
1pa4A	116	50.43	d.52.7.1	94409
1vqoZ	83	51.65	g.41.8.1	120387
1xvhA	129	52.63	a.8.1.2,a.8.1.2	116084,116085
1h2iA	209	54.50	d.50.1.3	76550
2f42A	179	59.60		
2qkdA	404	60.55		
3cinA	394	62.21		
1vqtA	213	70.03	c.1.2.3	120417
1uacH	114	71.14	b.1.1.1	99132
1rmd	116	72.59		
2qgpA	112	74.40		
2c5kT	95	74.47		
1rutX	188	74.75	g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3	111939,111940,111941,111942
3cngA	189	75.29		
2cveA	191	77.16	d.14.1.11,d.58.11.2	130869,130870
2jrpA	81	78.10		
2c1dA	264	78.32		
1a7iA	81	80.04	g.39.1.3,g.39.1.3	45143,45144
2q49A	359	80.13	c.2.1.3,d.81.1.1	139831,139832
1wjpA	107	81.49	g.37.1.1,g.37.1.1,g.37.1.1	114705,114706,114707
2hnhA	910	81.91		
2b4yA	271	86.53	c.31.1.5	127868
1yfuA	174	87.55	b.82.1.20	123094