# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1q1aA	289	2.346	c.31.1.5	95561
1yc5A	246	2.778	c.31.1.5	122910
1j8fA	323	3.938	c.31.1.5	62738
2drpA	66	8.425	g.37.1.1,g.37.1.1	45026,45027
1vk6A	269	9.494	d.113.1.4,d.113.1.4,g.41.14.1	100852,111609,111610
1ma3A	253	9.928	c.31.1.5	78883
1rmdA	116	10.19	g.37.1.1,g.44.1.1	45025,45322
2ctdA	96	12.93	g.37.1.1,g.37.1.1	130792,130793
1lv3A	68	13.02	g.39.1.9	78231
1uu1A	335	14.80	c.67.1.1	99993
1tq4A	413	16.63	c.37.1.8	107201
2gx9A	129	17.48	d.299.1.1	135828
1yuiA	54	19.73	g.37.1.1	45073
1l8dA	112	20.13	h.4.12.1	73687
2i13A	190	21.98	k.12.1.1	136964
1a1hA	90	24.20	g.37.1.1,g.37.1.1,g.37.1.1	45004,45005,45006
1a1gA	90	25.05	g.37.1.1,g.37.1.1,g.37.1.1	45010,45011,45012
1hk8A	605	37.81	c.7.1.3	83540
1a1iA	90	40.45	g.37.1.1,g.37.1.1,g.37.1.1	44998,44999,45000
2d9kA	75	41.93		
1llmC	88	42.48	g.37.1.1,g.37.1.1	91059,91060
2eloA	37	44.28		
2fiyA	309	45.03	e.59.1.1	133540
1vqoZ	83	49.17	g.41.8.1	120387
2f42A	179	50.16		
2qkdA	404	53.61		
1wjpA	107	54.33	g.37.1.1,g.37.1.1,g.37.1.1	114705,114706,114707
1xvhA	129	55.33	a.8.1.2,a.8.1.2	116084,116085
2hnhA	910	56.74		
2cveA	191	57.47	d.14.1.11,d.58.11.2	130869,130870
3cwfA	122	57.77		
1vbiA	344	58.08		
2pmzP	48	58.94		
1wjvA	79	63.60	g.37.1.2,g.37.1.2	114713,114714
1qxfA	66	64.61	g.41.8.4	96527
1a7iA	81	68.01	g.39.1.3,g.39.1.3	45143,45144
1h2iA	209	69.44	d.50.1.3	76550
1x31D	99	70.69		
1rmd	116	71.14		
1vqtA	213	74.88	c.1.2.3	120417
2r5xA	129	80.93		
2gmgA	105	82.18		
1ggzA	148	82.43	a.39.1.5	70176
2jrpA	81	83.07		
2hu9A	130	83.56		
2c5kT	95	83.84		
1lkoA	191	84.78	a.25.1.1,g.41.5.1	78063,78064
1oksA	56	88.38	a.8.5.1	93271
1yfuA	174	88.81	b.82.1.20	123094