# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1q1aA	289	2.047	c.31.1.5	95561
1yc5A	246	2.126	c.31.1.5	122910
1j8fA	323	3.247	c.31.1.5	62738
2drpA	66	7.483	g.37.1.1,g.37.1.1	45026,45027
1lv3A	68	8.584	g.39.1.9	78231
1vk6A	269	8.691	d.113.1.4,d.113.1.4,g.41.14.1	100852,111609,111610
1ma3A	253	9.192	c.31.1.5	78883
1rmdA	116	9.584	g.37.1.1,g.44.1.1	45025,45322
1uu1A	335	9.585	c.67.1.1	99993
1tq4A	413	10.24	c.37.1.8	107201
2ctdA	96	10.59	g.37.1.1,g.37.1.1	130792,130793
1l8dA	112	13.43	h.4.12.1	73687
2gx9A	129	16.84	d.299.1.1	135828
1yuiA	54	22.98	g.37.1.1	45073
2i13A	190	25.97	k.12.1.1	136964
1a1hA	90	33.33	g.37.1.1,g.37.1.1,g.37.1.1	45004,45005,45006
1rutX	188	34.97	g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3	111939,111940,111941,111942
2eloA	37	35.49		
2fiyA	309	36.31	e.59.1.1	133540
1a1gA	90	36.81	g.37.1.1,g.37.1.1,g.37.1.1	45010,45011,45012
1vqoZ	83	37.97	g.41.8.1	120387
1a1iA	90	39.71	g.37.1.1,g.37.1.1,g.37.1.1	44998,44999,45000
2d9kA	75	39.88		
1hk8A	605	41.18	c.7.1.3	83540
2hnhA	910	42.69		
1xvhA	129	43.77	a.8.1.2,a.8.1.2	116084,116085
1llmC	88	44.57	g.37.1.1,g.37.1.1	91059,91060
2qkdA	404	45.03		
1a7iA	81	47.84	g.39.1.3,g.39.1.3	45143,45144
1m2kA	249	50.05	c.31.1.5	84754
2cveA	191	50.87	d.14.1.11,d.58.11.2	130869,130870
3cngA	189	51.65		
1wjpA	107	59.50	g.37.1.1,g.37.1.1,g.37.1.1	114705,114706,114707
2pmzP	48	59.55		
1vqtA	213	61.11	c.1.2.3	120417
2hjhA	354	62.79		
2jrpA	81	64.21		
2b9dA	52	66.14		
1h2iA	209	66.79	d.50.1.3	76550
2ct0A	74	67.90		
1oksA	56	68.51	a.8.5.1	93271
1qxfA	66	68.68	g.41.8.4	96527
2gmgA	105	68.79		
1vbiA	344	70.99		
1v60A	123	71.46		
1x31D	99	72.61		
2hu9A	130	74.67		
1lkoA	191	75.59	a.25.1.1,g.41.5.1	78063,78064
1pa4A	116	78.31	d.52.7.1	94409
1rmd	116	78.89		
2c5kT	95	79.26		
2qgpA	112	81.47		
1wjvA	79	87.39	g.37.1.2,g.37.1.2	114713,114714
1yfuA	174	89.95	b.82.1.20	123094