# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yc5A	246	1.076	c.31.1.5	122910
1q1aA	289	2.022	c.31.1.5	95561
1vk6A	269	2.721	d.113.1.4,d.113.1.4,g.41.14.1	100852,111609,111610
1j8fA	323	3.493	c.31.1.5	62738
2b4yA	271	6.627	c.31.1.5	127868
1rmdA	116	6.797	g.37.1.1,g.44.1.1	45025,45322
1hk8A	605	6.936	c.7.1.3	83540
3cngA	189	9.084		
1ma3A	253	9.366	c.31.1.5	78883
2drpA	66	11.05	g.37.1.1,g.37.1.1	45026,45027
1xvhA	129	11.52	a.8.1.2,a.8.1.2	116084,116085
1m2kA	249	12.21	c.31.1.5	84754
2qgpA	112	14.51		
2ctdA	96	17.09	g.37.1.1,g.37.1.1	130792,130793
1lkoA	191	18.65	a.25.1.1,g.41.5.1	78063,78064
1lv3A	68	24.16	g.39.1.9	78231
1pa4A	116	24.22	d.52.7.1	94409
1llmC	88	27.01	g.37.1.1,g.37.1.1	91059,91060
1h2iA	209	27.72	d.50.1.3	76550
1a7iA	81	31.46	g.39.1.3,g.39.1.3	45143,45144
2pmzP	48	34.24		
1a1hA	90	35.99	g.37.1.1,g.37.1.1,g.37.1.1	45004,45005,45006
2i13A	190	38.31	k.12.1.1	136964
1rmd	116	42.11		
1zu1A	127	48.10		
1a1gA	90	48.22	g.37.1.1,g.37.1.1,g.37.1.1	45010,45011,45012
2b9dA	52	48.93		
2diiA	61	50.63	a.240.1.1	131530
2jrpA	81	51.33		
1vqoZ	83	53.57	g.41.8.1	120387
2hjhA	354	53.63		
1a1iA	90	56.50	g.37.1.1,g.37.1.1,g.37.1.1	44998,44999,45000
1m48A	133	58.00	a.26.1.2	74443
2o37A	92	60.62		
1zsoA	164	61.73	b.166.1.1	125610
1miwA	404	63.73	a.173.1.1,d.218.1.4	79162,79163
1l8dA	112	66.16	h.4.12.1	73687
2qkdA	404	68.65		
2inpL	89	72.10		
2hu9A	130	75.14		
1ku0A	388	80.99	c.69.1.18	72994
2c5kT	95	82.11		
1twfI	122	85.11	g.41.3.1,g.41.3.1	112733,112734
2ehsA	77	86.20		
2bf5A	98	89.33	d.137.1.1	128405