# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1q1aA 289 1.289 c.31.1.5 95561 1yc5A 246 1.369 c.31.1.5 122910 2drpA 66 2.059 g.37.1.1,g.37.1.1 45026,45027 1j8fA 323 2.872 c.31.1.5 62738 2ctdA 96 4.663 g.37.1.1,g.37.1.1 130792,130793 1ma3A 253 5.422 c.31.1.5 78883 1vk6A 269 7.221 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 1rmdA 116 8.425 g.37.1.1,g.44.1.1 45025,45322 2i13A 190 9.404 k.12.1.1 136964 1lv3A 68 11.22 g.39.1.9 78231 1a1gA 90 17.08 g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 1hk8A 605 20.33 c.7.1.3 83540 1a1hA 90 20.38 g.37.1.1,g.37.1.1,g.37.1.1 45004,45005,45006 2qgpA 112 21.25 1a1iA 90 22.32 g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 1h2iA 209 23.57 d.50.1.3 76550 1m2kA 249 24.07 c.31.1.5 84754 1tq4A 413 25.20 c.37.1.8 107201 1llmC 88 27.71 g.37.1.1,g.37.1.1 91059,91060 1yuiA 54 29.19 g.37.1.1 45073 1xvhA 129 29.92 a.8.1.2,a.8.1.2 116084,116085 2diiA 61 34.29 a.240.1.1 131530 1kdoA 227 36.80 c.37.1.1 68478 2c5kT 95 39.55 2hjhA 354 41.82 2b9dA 52 42.56 3cngA 189 43.03 2jrpA 81 44.54 1uu1A 335 44.72 c.67.1.1 99993 1l8dA 112 46.45 h.4.12.1 73687 2b4yA 271 46.90 c.31.1.5 127868 2j6aA 141 47.10 2pmzP 48 47.19 2ppwA 216 50.75 1vqoZ 83 54.23 g.41.8.1 120387 1pa4A 116 56.11 d.52.7.1 94409 2rk5A 87 56.91 2ehsA 77 61.12 2cklB 165 62.71 1uacH 114 64.31 b.1.1.1 99132 2hu9A 130 65.13 1omrA 201 67.21 a.39.1.5 93349 2eloA 37 68.45 1ku0A 388 70.12 c.69.1.18 72994 2r5xA 129 76.27 2gx9A 129 76.90 d.299.1.1 135828 1lkoA 191 78.56 a.25.1.1,g.41.5.1 78063,78064 2c0hA 353 80.20 c.1.8.3 129594 2r2zA 93 84.26 1h6zA 913 86.72 c.1.12.2,c.8.1.1,d.142.1.5 70906,70907,70908 1ub1A 133 88.01 d.10.1.3 99140 1jjzA 29 88.86 g.3.3.1 71699 1qxfA 66 88.89 g.41.8.4 96527