# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yc5A 246 2.598 c.31.1.5 122910 1vzyA 291 3.832 d.193.1.1,g.81.1.1 114042,114043 2ej9A 237 6.304 1uxy 340 6.907 1mw5A 187 8.185 d.259.1.1 91477 1x2iA 75 10.11 a.60.2.5 121641 2is9A 204 10.30 1omrA 201 10.63 a.39.1.5 93349 1mzhA 225 11.81 c.1.10.1 79698 2a8eA 220 11.83 d.296.1.1 126397 1zybA 232 13.87 a.4.5.4,b.82.3.2 125815,125816 2yxbA 161 15.11 1ohpA 125 15.68 d.17.4.3 118702 1o57A 291 15.98 a.4.5.40,c.61.1.1 92483,92484 1sg6A 393 16.03 e.22.1.1 105522 1j5sA 463 16.92 c.1.9.8 71580 2dbbA 151 17.29 1vq0A 302 18.47 d.193.1.1,g.81.1.1 114000,114001 2bh9A 489 18.51 1mzgA 146 18.86 d.224.1.1 79696 2oieA 111 20.68 a.204.1.2 139092 2bo5A 120 20.76 1lj2A 110 21.32 h.1.13.2 73926 1kk8B 139 23.64 a.39.1.5 77430 1ja9A 274 25.15 c.2.1.2 62817 1wwhA 119 27.92 d.58.7.1 121358 1alvA 173 27.95 a.39.1.8 17370 2d9kA 75 28.02 2c07A 285 28.09 c.2.1.2 129577 1sfxA 109 28.54 a.4.5.50 105505 1vqzA 341 29.51 d.224.1.3,d.104.1.3 120426,120427 2ph3A 245 31.11 1tzzA 392 31.46 c.1.11.2,d.54.1.1 112896,112897 2pbrA 195 32.70 2zc3A 168 32.98 2cfxA 144 33.01 a.4.5.32,d.58.4.2 130395,130396 1xmxA 385 33.36 c.52.1.26 115568 2dkzA 84 34.43 1uu1A 335 34.79 c.67.1.1 99993 1g8iA 190 35.04 a.39.1.5 60363 2z2mA 168 35.67 2qh9A 184 36.69 1i58A 189 36.74 d.122.1.3 61773 2cyyA 151 37.40 a.4.5.32,d.58.4.2 131028,131029 2i13A 190 39.38 k.12.1.1 136964 1b0nA 111 40.59 a.34.1.1,a.35.1.3 17001,17064 2amhA 207 40.72 c.51.4.2 127019 2gwmA 200 42.05 2dsjA 423 44.35 1sfeA 180 44.44 a.4.2.1,c.55.7.1 16073,33748 1cc8A 73 44.80 d.58.17.1 39343 1m4zA 238 44.82 b.34.12.1 78630 1w53A 84 44.90 a.186.1.2 109175 1e6wA 260 46.14 c.2.1.2 59326 1xfkA 336 46.30 c.42.1.1 115264 1j24A 143 47.67 c.52.1.20 84008 1ex2A 189 48.38 c.51.4.2 33225 2a15A 139 49.34 d.17.4.3 125973 2om6A 235 51.70 1s6cA 183 53.19 a.39.1.5 98594 1udxA 416 53.77 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 2p10A 286 54.34 3bs3A 76 55.52 2f06A 144 55.95 d.58.18.11,d.58.18.11 132652,132653 2i0xA 85 56.09 1vl8A 267 57.24 c.2.1.2 108733 2yqcA 486 57.32 2cveA 191 58.65 d.14.1.11,d.58.11.2 130869,130870 1dqsA 393 59.60 e.22.1.1 43347 2px6A 316 60.41 2cruA 118 60.64 a.5.6.1 130742 1mzbA 136 60.88 a.4.5.42 91497 1l6wA 220 62.28 c.1.10.1 73632 2c0rA 362 62.78 c.67.1.4 129604 2i7aA 174 63.59 1w23A 360 66.25 c.67.1.4 114088 2r5uA 200 66.28 1fmcA 255 66.51 c.2.1.2 29856 1d2zA 108 66.57 a.77.1.2 18437 2hinA 71 68.48 2hc5A 117 69.14 3bq3A 270 70.02 2yruA 118 70.39 1g0oA 283 70.41 c.2.1.2 60181 1r31A 428 70.67 d.58.20.1,d.179.1.1 96897,96898 2f3nA 76 70.72 a.60.1.2 132885 1qksA 567 71.47 a.3.1.2,b.70.2.1 15951,27710 2va8A 715 71.95 1w5fA 353 72.06 c.32.1.1,d.79.2.1 114247,114248 1u7kA 131 72.49 a.73.1.1 113087 1topA 162 73.55 a.39.1.5 17223 1ns5A 155 73.67 c.116.1.3 80705 2zadA 345 74.56 1wjpA 107 77.11 g.37.1.1,g.37.1.1,g.37.1.1 114705,114706,114707 2cklB 165 77.61 2pe8A 105 79.08 2vglA 621 79.84 1to3A 304 80.04 c.1.10.1 107161 2e5iA 124 80.48 2f1fA 164 80.76 d.58.18.6,d.58.18.6 132760,132761 2v1xA 591 83.29 2ew8A 249 83.40 c.2.1.2 132447 2h5xA 196 83.50 2oqyA 391 83.60 2eayA 233 83.84 1e0tA 470 83.86 b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1s1eA 224 85.41 a.39.1.5 112007 2q0zX 339 85.63 1zemA 262 85.73 c.2.1.2 124984 1whrA 124 85.94 d.68.7.1 114650 1tuzA 118 86.08 a.39.1.7 112670 1hi9A 274 86.71 c.99.1.1 61063 1otjA 283 87.15 b.82.2.5 93517 1x1tA 260 88.09 c.2.1.2 121597