Best Alignments for T0476

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1ma3A	1.3789e+00	1ma3A/T0476-1ma3A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.31.1.5
1q1aA	4.0654e+00	1q1aA/T0476-1q1aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.31.1.5
1l8dA	5.2655e+00	1l8dA/T0476-1l8dA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	h.4.12.1
2hjhA	6.3844e+00	2hjhA/T0476-2hjhA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1lv3A	6.8488e+00	1lv3A/T0476-1lv3A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.39.1.9
1yc5A	7.9913e+00	1yc5A/T0476-1yc5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.31.1.5
2ctdA	8.3415e+00	2ctdA/T0476-2ctdA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.37.1.1 g.37.1.1
2drpA	8.3434e+00	2drpA/T0476-2drpA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.37.1.1 g.37.1.1
1j8fA	8.4873e+00	1j8fA/T0476-1j8fA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.31.1.5
1vqoZ	1.2829e+01	1vqoZ/T0476-1vqoZ-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.41.8.1
1hnnA	1.3232e+01	1hnnA/T0476-1hnnA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.66.1.15
2a14A	1.4342e+01	2a14A/T0476-2a14A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.66.1.15
2i62A	1.4735e+01	2i62A/T0476-2i62A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1jj2Y	1.7428e+01	1jj2Y/T0476-1jj2Y-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.41.8.1
1g2fC	2.2322e+01	1g2fC/T0476-1g2fC-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	k.12.1.1
2gx9A	2.2389e+01	2gx9A/T0476-2gx9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.299.1.1
1uu1A	2.2399e+01	1uu1A/T0476-1uu1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.67.1.1
2eloA	2.3590e+01	2eloA/T0476-2eloA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1llmC	2.5237e+01	1llmC/T0476-1llmC-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1zaaC	2.5969e+01	1zaaC/T0476-1zaaC-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.37.1.1 g.37.1.1 g.37.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001