# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ma3A	253	2.075	c.31.1.5	78883
2hjhA	354	3.189		
1uu1A	335	3.325	c.67.1.1	99993
1q1aA	289	4.491	c.31.1.5	95561
1j8fA	323	5.960	c.31.1.5	62738
1vqoZ	83	8.185	g.41.8.1	120387
1hnnA	282	9.134	c.66.1.15	65895
2a14A	263	10.28	c.66.1.15	125972
1l8dA	112	10.36	h.4.12.1	73687
1lv3A	68	12.23	g.39.1.9	78231
2i62A	265	13.74		
1m3vA	122	14.27	g.39.1.3,g.39.1.3	84794,84795
1ukgA	252	15.55	b.29.1.1	99489
1jj2Y	73	17.28	g.41.8.1	63110
1yc5A	246	17.78	c.31.1.5	122910
2ctdA	96	19.94	g.37.1.1,g.37.1.1	130792,130793
1oglA	283	20.18	a.204.1.1	92922
1wjvA	79	20.40	g.37.1.2,g.37.1.2	114713,114714
3cwfA	122	29.71		
2gx9A	129	30.06	d.299.1.1	135828
1s72Z	73	30.15	g.41.8.1	105345
1xvhA	129	35.74	a.8.1.2,a.8.1.2	116084,116085
2drpA	66	37.02	g.37.1.1,g.37.1.1	45026,45027
2pmzP	48	37.75		
1ocvA	125	38.14	d.17.4.3	86810
1i1iP	681	39.17	d.92.1.5	40297
2eloA	37	44.21		
1uw4A	91	46.84	d.58.7.4	100071
1gppA	237	48.96	b.86.1.2	76262
2rk5A	87	50.52		
2cklB	165	51.55		
2jrpA	81	53.68		
1x1nA	524	54.30	c.1.8.1	121593
1dlyA	164	54.34	a.1.1.1	14983
1rmdA	116	54.56	g.37.1.1,g.44.1.1	45025,45322
1x31D	99	56.15		
2avuE	192	59.53		
2c5kT	95	60.66		
1we9A	64	62.06	g.50.1.2	114549
2gagD	99	67.11		
1qxfA	66	67.13	g.41.8.4	96527
1m2kA	249	67.60	c.31.1.5	84754
1eswA	500	68.25	c.1.8.1	59500
3cxkA	164	69.75		
2hu9A	130	73.69		
2j6aA	141	75.05		
1twfI	122	79.15	g.41.3.1,g.41.3.1	112733,112734
1mqvA	125	81.49	a.24.3.2	79415
1exrA	148	83.22	a.39.1.5	17299
1oksA	56	87.58	a.8.5.1	93271
1h2iA	209	89.85	d.50.1.3	76550