# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ma3A	253	1.394	c.31.1.5	78883
1q1aA	289	2.624	c.31.1.5	95561
1j8fA	323	3.886	c.31.1.5	62738
2hjhA	354	4.117		
2a14A	263	4.147	c.66.1.15	125972
1uu1A	335	4.837	c.67.1.1	99993
1vqoZ	83	5.168	g.41.8.1	120387
1hnnA	282	7.049	c.66.1.15	65895
2i62A	265	7.447		
1l8dA	112	7.515	h.4.12.1	73687
1lv3A	68	10.91	g.39.1.9	78231
1jj2Y	73	12.08	g.41.8.1	63110
1wjvA	79	13.75	g.37.1.2,g.37.1.2	114713,114714
2ctdA	96	14.63	g.37.1.1,g.37.1.1	130792,130793
1yc5A	246	15.38	c.31.1.5	122910
1ukgA	252	15.38	b.29.1.1	99489
1m3vA	122	15.94	g.39.1.3,g.39.1.3	84794,84795
1oglA	283	19.06	a.204.1.1	92922
2gx9A	129	21.05	d.299.1.1	135828
1s72Z	73	24.46	g.41.8.1	105345
2eloA	37	26.45		
1gppA	237	27.08	b.86.1.2	76262
2cklB	165	28.45		
2drpA	66	29.43	g.37.1.1,g.37.1.1	45026,45027
2pmzP	48	34.47		
1uw4A	91	36.04	d.58.7.4	100071
1xvhA	129	36.58	a.8.1.2,a.8.1.2	116084,116085
1ocvA	125	37.37	d.17.4.3	86810
3cwfA	122	42.60		
1rmdA	116	46.25	g.37.1.1,g.44.1.1	45025,45322
2jrpA	81	47.59		
2avuE	192	47.92		
1x31D	99	53.53		
1eswA	500	55.62	c.1.8.1	59500
1q0sA	259	57.70	c.66.1.28	95509
3cxkA	164	58.31		
1qxfA	66	61.42	g.41.8.4	96527
1g2fC	90	65.68	k.12.1.1	60222
2c5kT	95	66.25		
1x1nA	524	67.78	c.1.8.1	121593
1twfI	122	69.26	g.41.3.1,g.41.3.1	112733,112734
2gagD	99	70.45		
2fiqA	420	73.37	c.1.10.7	133527
1we9A	64	73.62	g.50.1.2	114549
2imfA	203	77.35		
2hu9A	130	79.77		
2qmlA	198	80.38		
2gnrA	145	83.78		
2e72A	49	84.49		
2jz8A	87	85.29		
1dlyA	164	87.11	a.1.1.1	14983
2cs3A	93	87.37	g.44.1.3	130745
2rk5A	87	87.85		
1oh0A	131	89.49	d.17.4.3	87004