# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ma3A 253 0.3836 c.31.1.5 78883 1q1aA 289 0.8689 c.31.1.5 95561 1j8fA 323 1.863 c.31.1.5 62738 1wjvA 79 3.214 g.37.1.2,g.37.1.2 114713,114714 1yc5A 246 3.233 c.31.1.5 122910 2hjhA 354 3.535 2a14A 263 6.544 c.66.1.15 125972 2ctdA 96 8.661 g.37.1.1,g.37.1.1 130792,130793 1we9A 64 9.918 g.50.1.2 114549 2drpA 66 10.38 g.37.1.1,g.37.1.1 45026,45027 2cklA 108 10.72 1vqoZ 83 11.68 g.41.8.1 120387 1lv3A 68 12.42 g.39.1.9 78231 1uu1A 335 15.42 c.67.1.1 99993 1hnnA 282 15.65 c.66.1.15 65895 2i7aA 174 15.80 2i62A 265 17.15 1l8dA 112 19.31 h.4.12.1 73687 1m3vA 122 22.44 g.39.1.3,g.39.1.3 84794,84795 1uw4A 91 22.50 d.58.7.4 100071 1jj2Y 73 22.63 g.41.8.1 63110 1exrA 148 26.30 a.39.1.5 17299 1rmdA 116 27.24 g.37.1.1,g.44.1.1 45025,45322 2eloA 37 30.61 1y1xA 191 33.62 a.39.1.8 116374 1oglA 283 33.72 a.204.1.1 92922 2j6aA 141 35.44 1s72Z 73 37.17 g.41.8.1 105345 1vk6A 269 37.82 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 1gppA 237 42.66 b.86.1.2 76262 1qxfA 66 43.02 g.41.8.4 96527 1g2fC 90 44.36 k.12.1.1 60222 1x31D 99 45.88 1ggzA 148 46.08 a.39.1.5 70176 2ctuA 73 47.52 2gagD 99 50.59 6rxnA 45 51.78 g.41.5.1 45222 2d9kA 75 54.94 2hu9A 130 56.30 2r2zA 93 56.49 1zaaC 87 57.20 g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015 1ukgA 252 57.39 b.29.1.1 99489 1a1iA 90 60.14 g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 2f42A 179 60.16 1dxgA 36 60.81 g.41.5.2 45247 2rk5A 87 63.83 1kqqA 139 64.54 a.4.3.1 72885 1aayA 90 64.68 g.37.1.1,g.37.1.1,g.37.1.1 45001,45002,45003 1brfA 53 64.80 g.41.5.1 45236 1twfI 122 65.29 g.41.3.1,g.41.3.1 112733,112734 1i1iP 681 66.14 d.92.1.5 40297 1bq9A 54 66.78 g.41.5.1 45238 1x1nA 524 67.38 c.1.8.1 121593 1thfD 253 69.82 c.1.2.1 28535 2gx9A 129 71.67 d.299.1.1 135828 2hq4A 161 72.52 2ausB 60 72.60 1oksA 56 72.62 a.8.5.1 93271 2e72A 49 74.11 1a1hA 90 74.76 g.37.1.1,g.37.1.1,g.37.1.1 45004,45005,45006 2jrrA 67 74.78 1eswA 500 75.49 c.1.8.1 59500 1rb9 53 75.50 1rmd 116 75.79 4enl 436 76.72 3cngA 189 77.13 2ct0A 74 78.73 2pveA 54 79.20 3cxkA 164 79.70 2pvxA 54 81.89 2dsxA 52 82.22 g.41.5.1 131699 2fk4A 75 82.42 2jrpA 81 83.26 1ptqA 50 86.52 g.49.1.1 45349 1i88A 389 87.32 c.95.1.2,c.95.1.2 66070,66071 2avuE 192 87.41 2p5iA 288 88.25 1a7iA 81 88.57 g.39.1.3,g.39.1.3 45143,45144 1b13A 54 89.03 g.41.5.1 45227 1iroA 54 89.67 g.41.5.1 45223