# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ma3A	253	1.675	c.31.1.5	78883
1uu1A	335	3.338	c.67.1.1	99993
1vqoZ	83	5.032	g.41.8.1	120387
1q1aA	289	5.410	c.31.1.5	95561
1j8fA	323	7.409	c.31.1.5	62738
2a14A	263	7.845	c.66.1.15	125972
1hnnA	282	8.466	c.66.1.15	65895
1l8dA	112	9.299	h.4.12.1	73687
2hjhA	354	9.633		
2i62A	265	11.18		
1jj2Y	73	12.73	g.41.8.1	63110
1ukgA	252	13.35	b.29.1.1	99489
1m3vA	122	14.60	g.39.1.3,g.39.1.3	84794,84795
1yc5A	246	15.37	c.31.1.5	122910
2gx9A	129	15.58	d.299.1.1	135828
1lv3A	68	16.13	g.39.1.9	78231
1oglA	283	22.77	a.204.1.1	92922
1uw4A	91	23.07	d.58.7.4	100071
1wjvA	79	23.77	g.37.1.2,g.37.1.2	114713,114714
2ctdA	96	24.46	g.37.1.1,g.37.1.1	130792,130793
3cwfA	122	25.39		
1s72Z	73	31.01	g.41.8.1	105345
1gppA	237	34.88	b.86.1.2	76262
1ocvA	125	35.51	d.17.4.3	86810
2eloA	37	46.41		
1h2iA	209	46.51	d.50.1.3	76550
2drpA	66	48.87	g.37.1.1,g.37.1.1	45026,45027
2avuE	192	49.42		
2pmzP	48	51.39		
2imfA	203	52.18		
1dlyA	164	52.89	a.1.1.1	14983
1rmdA	116	53.70	g.37.1.1,g.44.1.1	45025,45322
1x1nA	524	55.23	c.1.8.1	121593
2rk5A	87	56.66		
1i1iP	681	59.48	d.92.1.5	40297
1j1xH	114	60.17	b.1.1.1	77063
2e27H	126	66.88		
1s7kA	182	68.33	d.108.1.1	118878
1vk6A	269	68.86	d.113.1.4,d.113.1.4,g.41.14.1	100852,111609,111610
1thfD	253	70.76	c.1.2.1	28535
2jrpA	81	74.06		
1we9A	64	75.65	g.50.1.2	114549
1q0sA	259	76.72	c.66.1.28	95509
2hu9A	130	77.24		
1qxfA	66	79.44	g.41.8.4	96527
2qmlA	198	84.72		
2c5kT	95	87.02		
2jz8A	87	88.04		
3c8dA	403	88.12		
1eswA	500	89.43	c.1.8.1	59500