# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ma3A	253	2.462	c.31.1.5	78883
1uu1A	335	3.810	c.67.1.1	99993
1vqoZ	83	6.719	g.41.8.1	120387
1q1aA	289	6.772	c.31.1.5	95561
2a14A	263	7.665	c.66.1.15	125972
1j8fA	323	8.079	c.31.1.5	62738
1hnnA	282	8.530	c.66.1.15	65895
2hjhA	354	10.26		
2i62A	265	10.89		
1l8dA	112	11.45	h.4.12.1	73687
1ukgA	252	12.59	b.29.1.1	99489
1jj2Y	73	14.98	g.41.8.1	63110
2gx9A	129	17.17	d.299.1.1	135828
1oglA	283	18.16	a.204.1.1	92922
1lv3A	68	18.36	g.39.1.9	78231
1m3vA	122	19.17	g.39.1.3,g.39.1.3	84794,84795
1yc5A	246	22.37	c.31.1.5	122910
3cwfA	122	26.46		
1uw4A	91	27.86	d.58.7.4	100071
2ctdA	96	28.19	g.37.1.1,g.37.1.1	130792,130793
1h2iA	209	38.69	d.50.1.3	76550
1ocvA	125	40.10	d.17.4.3	86810
1s72Z	73	40.29	g.41.8.1	105345
1wjvA	79	42.61	g.37.1.2,g.37.1.2	114713,114714
2avuE	192	46.51		
2eloA	37	47.61		
2pmzP	48	52.74		
2drpA	66	54.36	g.37.1.1,g.37.1.1	45026,45027
1gppA	237	55.04	b.86.1.2	76262
2imfA	203	55.55		
1rmdA	116	56.04	g.37.1.1,g.44.1.1	45025,45322
3c8dA	403	61.90		
1thfD	253	65.82	c.1.2.1	28535
1s7kA	182	66.55	d.108.1.1	118878
2rk5A	87	69.26		
1q0sA	259	69.95	c.66.1.28	95509
2e27H	126	70.36		
1x1nA	524	71.48	c.1.8.1	121593
1xvhA	129	71.66	a.8.1.2,a.8.1.2	116084,116085
2qmlA	198	74.22		
1vk6A	269	76.45	d.113.1.4,d.113.1.4,g.41.14.1	100852,111609,111610
1eswA	500	78.12	c.1.8.1	59500
1i1iP	681	79.90	d.92.1.5	40297
1dlyA	164	80.63	a.1.1.1	14983
1j1xH	114	84.37	b.1.1.1	77063
2ovkC	159	86.60		
2jrpA	81	86.98		
2hu9A	130	87.72		
1qxfA	66	89.80	g.41.8.4	96527