# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ma3A	253	1.796	c.31.1.5	78883
1uu1A	335	4.440	c.67.1.1	99993
1q1aA	289	4.846	c.31.1.5	95561
2a14A	263	6.414	c.66.1.15	125972
1j8fA	323	6.568	c.31.1.5	62738
1hnnA	282	6.820	c.66.1.15	65895
1vqoZ	83	7.675	g.41.8.1	120387
2hjhA	354	8.413		
1l8dA	112	9.115	h.4.12.1	73687
2i62A	265	9.798		
1lv3A	68	14.38	g.39.1.9	78231
1oglA	283	15.21	a.204.1.1	92922
1m3vA	122	15.40	g.39.1.3,g.39.1.3	84794,84795
1ukgA	252	16.65	b.29.1.1	99489
2gx9A	129	16.79	d.299.1.1	135828
1yc5A	246	17.38	c.31.1.5	122910
1jj2Y	73	18.06	g.41.8.1	63110
2ctdA	96	23.91	g.37.1.1,g.37.1.1	130792,130793
3cwfA	122	29.96		
1uw4A	91	32.98	d.58.7.4	100071
1xvhA	129	34.49	a.8.1.2,a.8.1.2	116084,116085
1gppA	237	35.36	b.86.1.2	76262
1wjvA	79	36.67	g.37.1.2,g.37.1.2	114713,114714
3c8dA	403	40.65		
2avuE	192	42.14		
2eloA	37	43.13		
1ocvA	125	47.92	d.17.4.3	86810
2pmzP	48	49.25		
1s72Z	73	49.94	g.41.8.1	105345
2drpA	66	50.27	g.37.1.1,g.37.1.1	45026,45027
1h2iA	209	52.19	d.50.1.3	76550
1rmdA	116	52.70	g.37.1.1,g.44.1.1	45025,45322
1s7kA	182	53.11	d.108.1.1	118878
1eswA	500	53.28	c.1.8.1	59500
2imfA	203	53.91		
2ovkC	159	54.32		
1x1nA	524	54.33	c.1.8.1	121593
1thfD	253	55.92	c.1.2.1	28535
2cklB	165	57.47		
2p97A	201	58.73		
2c5kT	95	60.43		
1i1iP	681	60.95	d.92.1.5	40297
2qmlA	198	63.93		
1dlyA	164	64.63	a.1.1.1	14983
2hu9A	130	66.41		
2rk5A	87	67.49		
1q0sA	259	69.28	c.66.1.28	95509
1vk6A	269	76.80	d.113.1.4,d.113.1.4,g.41.14.1	100852,111609,111610
2r2dA	276	78.05		
1x31D	99	80.19		
1qxfA	66	82.35	g.41.8.4	96527
2jrpA	81	83.42		
1we9A	64	89.76	g.50.1.2	114549