# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ma3A	253	3.508	c.31.1.5	78883
1q1aA	289	7.382	c.31.1.5	95561
1j8fA	323	11.15	c.31.1.5	62738
1yc5A	246	13.95	c.31.1.5	122910
2drpA	66	17.48	g.37.1.1,g.37.1.1	45026,45027
1uu1A	335	21.49	c.67.1.1	99993
1vqoZ	83	22.90	g.41.8.1	120387
2hjhA	354	24.54		
1lv3A	68	29.03	g.39.1.9	78231
1xvhA	129	30.66	a.8.1.2,a.8.1.2	116084,116085
1gppA	237	33.54	b.86.1.2	76262
1wjvA	79	34.09	g.37.1.2,g.37.1.2	114713,114714
1vk6A	269	37.02	d.113.1.4,d.113.1.4,g.41.14.1	100852,111609,111610
2jrpA	81	39.00		
1jj2Y	73	42.14	g.41.8.1	63110
1ocvA	125	43.89	d.17.4.3	86810
1l8dA	112	47.12	h.4.12.1	73687
1m3vA	122	49.10	g.39.1.3,g.39.1.3	84794,84795
2eloA	37	57.49		
1m2kA	249	62.08	c.31.1.5	84754
1g2fC	90	62.43	k.12.1.1	60222
1aayA	90	63.89	g.37.1.1,g.37.1.1,g.37.1.1	45001,45002,45003
1uf3A	228	64.63	d.159.1.6	99317
1zaaC	87	70.46	g.37.1.1,g.37.1.1,g.37.1.1	45013,45014,45015
2ctdA	96	71.32	g.37.1.1,g.37.1.1	130792,130793
1y1xA	191	72.32	a.39.1.8	116374
1a1hA	90	75.03	g.37.1.1,g.37.1.1,g.37.1.1	45004,45005,45006
2cklB	165	76.72		
1omrA	201	78.42	a.39.1.5	93349
2p5iA	288	80.28		
1ukgA	252	83.55	b.29.1.1	99489
2i13A	190	88.12	k.12.1.1	136964