# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ma3A	253	4.568	c.31.1.5	78883
1uu1A	335	8.032	c.67.1.1	99993
1q1aA	289	9.840	c.31.1.5	95561
2hjhA	354	10.78		
1vqoZ	83	12.11	g.41.8.1	120387
1hnnA	282	12.55	c.66.1.15	65895
1l8dA	112	17.53	h.4.12.1	73687
2a14A	263	19.56	c.66.1.15	125972
1m3vA	122	19.85	g.39.1.3,g.39.1.3	84794,84795
1j8fA	323	19.86	c.31.1.5	62738
1wjvA	79	21.80	g.37.1.2,g.37.1.2	114713,114714
2drpA	66	22.46	g.37.1.1,g.37.1.1	45026,45027
1lv3A	68	22.70	g.39.1.9	78231
1oglA	283	23.32	a.204.1.1	92922
2i62A	265	24.75		
1jj2Y	73	25.29	g.41.8.1	63110
1yc5A	246	28.71	c.31.1.5	122910
1ukgA	252	29.91	b.29.1.1	99489
2ctdA	96	31.00	g.37.1.1,g.37.1.1	130792,130793
1gppA	237	41.21	b.86.1.2	76262
1g2fC	90	47.08	k.12.1.1	60222
3cwfA	122	47.85		
2pmzP	48	47.88		
1s72Z	73	48.77	g.41.8.1	105345
1h2iA	209	49.08	d.50.1.3	76550
1xvhA	129	49.61	a.8.1.2,a.8.1.2	116084,116085
2gx9A	129	53.82	d.299.1.1	135828
1vk6A	269	55.06	d.113.1.4,d.113.1.4,g.41.14.1	100852,111609,111610
1we9A	64	55.80	g.50.1.2	114549
1m2kA	249	56.19	c.31.1.5	84754
1zaaC	87	63.80	g.37.1.1,g.37.1.1,g.37.1.1	45013,45014,45015
2i7aA	174	64.76		
2cklB	165	64.79		
2eloA	37	68.32		
2c5kT	95	73.96		
2avuE	192	74.23		
1rmdA	116	74.51	g.37.1.1,g.44.1.1	45025,45322
1uw4A	91	78.47	d.58.7.4	100071
1a1hA	90	80.10	g.37.1.1,g.37.1.1,g.37.1.1	45004,45005,45006
2cklA	108	81.42		
1ocvA	125	82.32	d.17.4.3	86810
2jrpA	81	82.97		
2i13A	190	88.23	k.12.1.1	136964
2hu9A	130	89.03