# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yo6A 250 1.696 c.2.1.2 123769 2i7aA 174 2.218 2e27H 126 2.625 1q0sA 259 3.708 c.66.1.28 95509 1l8dA 112 4.916 h.4.12.1 73687 2ch4A 320 6.460 b.40.7.1,d.122.1.3 130447,130448 2ctdA 96 6.493 g.37.1.1,g.37.1.1 130792,130793 1kcvH 217 8.149 b.1.1.1,b.1.1.2 72315,72316 1vqoZ 83 8.567 g.41.8.1 120387 2fibA 269 9.001 d.171.1.1 42457 1kolA 398 9.632 b.35.1.2,c.2.1.1 77474,77475 1ma3A 253 10.85 c.31.1.5 78883 2drpA 66 11.61 g.37.1.1,g.37.1.1 45026,45027 1wjvA 79 14.02 g.37.1.2,g.37.1.2 114713,114714 1uw4A 91 15.81 d.58.7.4 100071 1moq 368 16.09 2pajA 492 16.22 2j6aA 141 16.41 1z6uA 150 16.84 2a14A 263 16.89 c.66.1.15 125972 1lv3A 68 18.38 g.39.1.9 78231 1n0xH 230 18.76 b.1.1.1,b.1.1.2 91528,91529 1rjdA 334 20.66 c.66.1.37 97558 1jj2Y 73 20.96 g.41.8.1 63110 1eq2A 310 21.79 c.2.1.2 29814 1rroA 108 21.96 a.39.1.4 17195 2gx9A 129 22.56 d.299.1.1 135828 1uf3A 228 22.58 d.159.1.6 99317 1q1aA 289 23.25 c.31.1.5 95561 3c8dA 403 24.29 2hhiA 204 26.77 2c5kT 95 26.91 2qgpA 112 27.21 1vm8A 534 27.74 c.68.1.5 113670 2icyA 469 28.63 b.81.1.4,c.68.1.5 137257,137258 1gppA 237 28.76 b.86.1.2 76262 2fiqA 420 29.11 c.1.10.7 133527 1i1iP 681 29.14 d.92.1.5 40297 2qkpA 151 29.63 2airB 153 30.80 d.58.2.1,g.41.7.1 126832,126833 2gdnA 267 32.56 3cngA 189 32.58 1snyA 267 32.82 c.2.1.2 105833 2hnhA 910 33.88 1we9A 64 34.38 g.50.1.2 114549 1ncwH 222 38.67 b.1.1.1,b.1.1.2 85555,85556 2p71A 132 38.81 a.39.2.1 139516 3cssA 267 39.18 2obfA 289 40.65 2pmzP 48 41.69 1g2fC 90 41.82 k.12.1.1 60222 1ukgA 252 42.28 b.29.1.1 99489 1amk 251 46.37 2f6uA 234 47.40 c.1.4.1 133061 2a77H 222 47.57 b.1.1.2 126328 1s72Z 73 47.84 g.41.8.1 105345 1thgA 544 48.78 c.69.1.17 34763 1xkyA 301 49.04 c.1.10.1 122094 1mvwB 145 49.09 i.15.1.1 79524 3cwfA 122 49.76 2d1gA 498 50.30 1zaaC 87 50.41 g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015 1h2iA 209 50.56 d.50.1.3 76550 1xvwA 160 50.90 c.47.1.10 122387 1dlyA 164 50.96 a.1.1.1 14983 1hjxA 362 53.75 c.1.8.5,d.26.3.1 83512,83513 2eloA 37 56.79 1r9dA 787 57.44 c.7.1.1 104865 2c2hA 192 57.74 c.37.1.8 129668 1vk6A 269 58.77 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 2fqhA 109 59.28 1m3vA 122 59.81 g.39.1.3,g.39.1.3 84794,84795 3ceyA 474 60.93 2hx1A 284 62.58 1rmdA 116 62.96 g.37.1.1,g.44.1.1 45025,45322 1j8fA 323 64.16 c.31.1.5 62738 1k2fA 190 64.38 b.8.1.2 68054 1a6vH 120 68.59 b.1.1.1 20257 3cxkA 164 70.26 1go3F 107 70.41 a.60.8.2 65407 1a1hA 90 70.43 g.37.1.1,g.37.1.1,g.37.1.1 45004,45005,45006 2j13A 247 71.25 c.6.2.3 137934 1e9rA 437 71.33 c.37.1.11 64827 1m1nA 491 71.63 c.92.2.3 78417 1j7xA 302 72.45 c.14.1.2 66425 2avuE 192 73.81 1aayA 90 73.99 g.37.1.1,g.37.1.1,g.37.1.1 45001,45002,45003 1amuA 563 75.85 e.23.1.1 43351 2v1xA 591 76.25 2o5fA 171 76.65 2gkmA 136 77.57 3b40A 417 79.29 2nwqA 272 79.53 1dfoA 417 82.53 c.67.1.4 34480 1a8vA 121 82.68 a.140.3.1,b.40.4.5 64712,64713 1dqqB 210 82.98 b.1.1.1,b.1.1.2 20421,21391 3bqfA 194 83.34 1rutX 188 83.55 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 2jrpA 81 85.38 2f42A 179 86.90 1g71A 347 87.01 d.264.1.1 43268 2qm8A 337 87.58 1gz6A 319 87.60 c.2.1.2 76410 1r85A 379 89.14 c.1.8.3 104839