# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ma3A	253	8.129	c.31.1.5	78883
2hjhA	354	9.551		
1uu1A	335	9.716	c.67.1.1	99993
1hnnA	282	13.91	c.66.1.15	65895
1vqoZ	83	14.45	g.41.8.1	120387
1q1aA	289	16.98	c.31.1.5	95561
1l8dA	112	19.71	h.4.12.1	73687
1j8fA	323	22.87	c.31.1.5	62738
2a14A	263	25.51	c.66.1.15	125972
1lv3A	68	25.73	g.39.1.9	78231
1ukgA	252	27.01	b.29.1.1	99489
1jj2Y	73	27.18	g.41.8.1	63110
2drpA	66	27.29	g.37.1.1,g.37.1.1	45026,45027
1wjvA	79	28.47	g.37.1.2,g.37.1.2	114713,114714
1m3vA	122	28.52	g.39.1.3,g.39.1.3	84794,84795
2i62A	265	30.50		
1yc5A	246	32.11	c.31.1.5	122910
1oglA	283	32.77	a.204.1.1	92922
2ctdA	96	32.89	g.37.1.1,g.37.1.1	130792,130793
1s72Z	73	50.98	g.41.8.1	105345
1g2fC	90	54.53	k.12.1.1	60222
2pmzP	48	56.81		
1xvhA	129	66.42	a.8.1.2,a.8.1.2	116084,116085
2eloA	37	66.84		
3cwfA	122	67.20		
1j1xH	114	70.57	b.1.1.1	77063
1zaaC	87	70.60	g.37.1.1,g.37.1.1,g.37.1.1	45013,45014,45015
1gppA	237	71.07	b.86.1.2	76262
2i7aA	174	72.21		
1we9A	64	72.37	g.50.1.2	114549
2c5kT	95	72.84		
1uw4A	91	77.75	d.58.7.4	100071
1ocvA	125	78.24	d.17.4.3	86810
1vk6A	269	81.43	d.113.1.4,d.113.1.4,g.41.14.1	100852,111609,111610
2hu9A	130	85.84		
2jrpA	81	86.71		
1h2iA	209	86.79	d.50.1.3	76550
1a1hA	90	89.38	g.37.1.1,g.37.1.1,g.37.1.1	45004,45005,45006
2cklB	165	89.88