# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ma3A	253	4.089	c.31.1.5	78883
1q1aA	289	6.877	c.31.1.5	95561
1hnnA	282	8.855	c.66.1.15	65895
2hjhA	354	10.30		
1vqoZ	83	10.54	g.41.8.1	120387
1j8fA	323	10.87	c.31.1.5	62738
1uu1A	335	12.91	c.67.1.1	99993
1ukgA	252	14.95	b.29.1.1	99489
2a14A	263	16.32	c.66.1.15	125972
1m3vA	122	16.91	g.39.1.3,g.39.1.3	84794,84795
1l8dA	112	18.15	h.4.12.1	73687
2i62A	265	20.76		
2gx9A	129	21.65	d.299.1.1	135828
1jj2Y	73	22.14	g.41.8.1	63110
1lv3A	68	23.25	g.39.1.9	78231
2ctdA	96	26.34	g.37.1.1,g.37.1.1	130792,130793
1wjvA	79	30.67	g.37.1.2,g.37.1.2	114713,114714
1gppA	237	31.17	b.86.1.2	76262
1uw4A	91	38.56	d.58.7.4	100071
2drpA	66	39.17	g.37.1.1,g.37.1.1	45026,45027
1oglA	283	39.51	a.204.1.1	92922
2eloA	37	39.55		
2cklB	165	43.08		
1ocvA	125	46.03	d.17.4.3	86810
1xvhA	129	46.96	a.8.1.2,a.8.1.2	116084,116085
1s72Z	73	49.32	g.41.8.1	105345
2pmzP	48	50.06		
3cwfA	122	53.54		
1yc5A	246	55.95	c.31.1.5	122910
2imfA	203	58.57		
1we9A	64	67.18	g.50.1.2	114549
1pa4A	116	77.05	d.52.7.1	94409
2c5kT	95	77.80		
1j1xH	114	78.00	b.1.1.1	77063
2e27H	126	79.97		
2jrpA	81	82.50		
1rmdA	116	83.57	g.37.1.1,g.44.1.1	45025,45322
2avuE	192	88.47