# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ma3A	253	1.861	c.31.1.5	78883
1q1aA	289	3.190	c.31.1.5	95561
2hjhA	354	5.405		
1j8fA	323	5.420	c.31.1.5	62738
1vqoZ	83	9.553	g.41.8.1	120387
1uu1A	335	11.88	c.67.1.1	99993
1l8dA	112	12.41	h.4.12.1	73687
1yc5A	246	14.78	c.31.1.5	122910
2a14A	263	15.91	c.66.1.15	125972
1wjvA	79	16.19	g.37.1.2,g.37.1.2	114713,114714
1lv3A	68	16.72	g.39.1.9	78231
1ukgA	252	17.81	b.29.1.1	99489
1hnnA	282	18.55	c.66.1.15	65895
2ctdA	96	19.47	g.37.1.1,g.37.1.1	130792,130793
1jj2Y	73	21.46	g.41.8.1	63110
2gx9A	129	21.91	d.299.1.1	135828
2i62A	265	23.58		
1oglA	283	25.31	a.204.1.1	92922
1gppA	237	27.04	b.86.1.2	76262
1uw4A	91	29.39	d.58.7.4	100071
1m3vA	122	33.87	g.39.1.3,g.39.1.3	84794,84795
2drpA	66	39.80	g.37.1.1,g.37.1.1	45026,45027
1s72Z	73	41.39	g.41.8.1	105345
2eloA	37	42.25		
1ocvA	125	43.85	d.17.4.3	86810
2cklA	108	44.50		
1eswA	500	44.69	c.1.8.1	59500
1xvhA	129	47.39	a.8.1.2,a.8.1.2	116084,116085
1we9A	64	57.45	g.50.1.2	114549
2pmzP	48	58.12		
1x31D	99	60.43		
1vk6A	269	64.30	d.113.1.4,d.113.1.4,g.41.14.1	100852,111609,111610
2c5kT	95	64.70		
1qxfA	66	66.31	g.41.8.4	96527
1rmdA	116	68.48	g.37.1.1,g.44.1.1	45025,45322
2cklB	165	68.77		
2gagD	99	72.45		
2imfA	203	73.48		
2hu9A	130	74.29		
1dlyA	164	74.31	a.1.1.1	14983
1exrA	148	76.11	a.39.1.5	17299
2pnkA	428	76.72		
3cwfA	122	76.73		
2jrpA	81	81.19		
2avuE	192	81.24		
1twfI	122	82.25	g.41.3.1,g.41.3.1	112733,112734
1x1nA	524	83.83	c.1.8.1	121593
2f42A	179	84.27		
1dxgA	36	88.31	g.41.5.2	45247
1zaaC	87	88.37	g.37.1.1,g.37.1.1,g.37.1.1	45013,45014,45015
2ctuA	73	88.53