# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ma3A	253	2.681	c.31.1.5	78883
1q1aA	289	4.725	c.31.1.5	95561
2hjhA	354	6.677		
1j8fA	323	8.861	c.31.1.5	62738
1vqoZ	83	9.213	g.41.8.1	120387
1uu1A	335	9.935	c.67.1.1	99993
1l8dA	112	13.37	h.4.12.1	73687
1lv3A	68	14.14	g.39.1.9	78231
1wjvA	79	16.58	g.37.1.2,g.37.1.2	114713,114714
1jj2Y	73	17.04	g.41.8.1	63110
1oglA	283	17.25	a.204.1.1	92922
2a14A	263	19.66	c.66.1.15	125972
1hnnA	282	21.97	c.66.1.15	65895
2ctdA	96	23.20	g.37.1.1,g.37.1.1	130792,130793
2gx9A	129	23.36	d.299.1.1	135828
2i62A	265	24.24		
1uw4A	91	24.85	d.58.7.4	100071
1yc5A	246	25.53	c.31.1.5	122910
1m3vA	122	31.44	g.39.1.3,g.39.1.3	84794,84795
1xvhA	129	36.87	a.8.1.2,a.8.1.2	116084,116085
1s72Z	73	40.19	g.41.8.1	105345
1ukgA	252	40.22	b.29.1.1	99489
1we9A	64	46.33	g.50.1.2	114549
2eloA	37	47.22		
1i1iP	681	48.60	d.92.1.5	40297
1eswA	500	50.41	c.1.8.1	59500
2drpA	66	50.41	g.37.1.1,g.37.1.1	45026,45027
1gppA	237	52.53	b.86.1.2	76262
1vk6A	269	57.69	d.113.1.4,d.113.1.4,g.41.14.1	100852,111609,111610
1ocvA	125	59.16	d.17.4.3	86810
1x1nA	524	62.69	c.1.8.1	121593
2pmzP	48	65.51		
1x31D	99	67.94		
2rk5A	87	71.68		
1rmdA	116	73.44	g.37.1.1,g.44.1.1	45025,45322
2jrpA	81	73.92		
2cklB	165	75.34		
2c5kT	95	78.18		
2hu9A	130	78.92		
1qxfA	66	81.46	g.41.8.4	96527
1m2kA	249	86.00	c.31.1.5	84754
2pnkA	428	86.12		
2avuE	192	86.38