# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ma3A	253	0.4177	c.31.1.5	78883
1q1aA	289	2.276	c.31.1.5	95561
1j8fA	323	4.375	c.31.1.5	62738
1yc5A	246	5.076	c.31.1.5	122910
1xvhA	129	7.289	a.8.1.2,a.8.1.2	116084,116085
1m2kA	249	7.580	c.31.1.5	84754
1lv3A	68	9.298	g.39.1.9	78231
1vk6A	269	11.36	d.113.1.4,d.113.1.4,g.41.14.1	100852,111609,111610
2hjhA	354	13.50		
3cngA	189	15.04		
1we9A	64	16.60	g.50.1.2	114549
1vqoZ	83	17.12	g.41.8.1	120387
1pa4A	116	20.62	d.52.7.1	94409
1ocvA	125	21.51	d.17.4.3	86810
2qgpA	112	25.01		
1zu1A	127	27.93		
1fp0A	88	28.55	g.50.1.2	45361
2i62A	265	28.98		
1h2iA	209	31.85	d.50.1.3	76550
1hk8A	605	35.10	c.7.1.3	83540
2b4yA	271	35.95	c.31.1.5	127868
1m3vA	122	36.32	g.39.1.3,g.39.1.3	84794,84795
2pmzP	48	38.60		
1jj2Y	73	40.22	g.41.8.1	63110
2rk5A	87	41.94		
1gppA	237	43.29	b.86.1.2	76262
1m48A	133	43.32	a.26.1.2	74443
2c5kT	95	43.49		
2jrpA	81	43.69		
1ukgA	252	45.89	b.29.1.1	99489
2oxoA	103	46.11		
2jz8A	87	47.48		
1uw4A	91	51.44	d.58.7.4	100071
2a14A	263	53.44	c.66.1.15	125972
1dlyA	164	54.18	a.1.1.1	14983
2diiA	61	54.28	a.240.1.1	131530
1a7iA	81	57.66	g.39.1.3,g.39.1.3	45143,45144
2jr1A	79	59.92		
2q81A	119	61.24		
1l8dA	112	61.38	h.4.12.1	73687
2drpA	66	62.06	g.37.1.1,g.37.1.1	45026,45027
2b9dA	52	62.12		
2cklA	108	63.82		
3bjoA	103	66.43		
2p97A	201	69.89		
2hu9A	130	70.40		
2eloA	37	70.48		
1q3eA	207	70.49	b.82.3.2	95669
2ehsA	77	72.95		
1omrA	201	76.26	a.39.1.5	93349
2qnwA	82	78.67		
2h4vA	320	78.72		
2ctdA	96	79.41	g.37.1.1,g.37.1.1	130792,130793
1iu1A	146	79.78	b.1.10.2	71428
1lkoA	191	81.75	a.25.1.1,g.41.5.1	78063,78064
2gnrA	145	84.16		
1mqvA	125	86.48	a.24.3.2	79415
1hnnA	282	87.03	c.66.1.15	65895
1ya5T	90	87.06		
2inpL	89	88.71