# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ma3A	253	0.9441	c.31.1.5	78883
1j8fA	323	5.510	c.31.1.5	62738
2hjhA	354	5.530		
1q1aA	289	6.932	c.31.1.5	95561
1vqoZ	83	8.230	g.41.8.1	120387
1hnnA	282	12.26	c.66.1.15	65895
2ctdA	96	14.12	g.37.1.1,g.37.1.1	130792,130793
1jj2Y	73	16.56	g.41.8.1	63110
1gppA	237	17.52	b.86.1.2	76262
1we9A	64	17.93	g.50.1.2	114549
1ukgA	252	18.10	b.29.1.1	99489
1yc5A	246	18.12	c.31.1.5	122910
1ocvA	125	19.03	d.17.4.3	86810
2i62A	265	19.42		
1uu1A	335	19.50	c.67.1.1	99993
1lv3A	68	20.81	g.39.1.9	78231
1h2iA	209	21.50	d.50.1.3	76550
2a14A	263	23.54	c.66.1.15	125972
2drpA	66	23.89	g.37.1.1,g.37.1.1	45026,45027
1xvhA	129	24.56	a.8.1.2,a.8.1.2	116084,116085
2j6aA	141	27.94		
2qgpA	112	28.10		
2c5kT	95	28.29		
1oglA	283	30.54	a.204.1.1	92922
2jrpA	81	30.87		
1mwvA	714	31.56	a.93.1.3,a.93.1.3	85161,85162
2cklB	165	32.01		
2p97A	201	34.99		
2pmzP	48	37.27		
1l8dA	112	38.22	h.4.12.1	73687
1m2kA	249	40.40	c.31.1.5	84754
1wjvA	79	41.91	g.37.1.2,g.37.1.2	114713,114714
1i1iP	681	46.86	d.92.1.5	40297
2eloA	37	47.21		
2hu9A	130	51.55		
1k2fA	190	53.03	b.8.1.2	68054
1vk6A	269	54.80	d.113.1.4,d.113.1.4,g.41.14.1	100852,111609,111610
1g2fC	90	56.39	k.12.1.1	60222
1s72Z	73	58.25	g.41.8.1	105345
2fiyA	309	59.43	e.59.1.1	133540
2r2zA	93	60.85		
1mqvA	125	62.52	a.24.3.2	79415
1m3vA	122	64.78	g.39.1.3,g.39.1.3	84794,84795
2diiA	61	68.12	a.240.1.1	131530
1elrA	131	68.64	a.118.8.1	19209
2cklA	108	71.80		
1uhkA	191	73.10	a.39.1.5	119681
1pa4A	116	76.57	d.52.7.1	94409
2fmpA	335	77.13	a.60.6.1,a.60.12.1,d.218.1.2	133786,133787,133788
1zaaC	87	77.95	g.37.1.1,g.37.1.1,g.37.1.1	45013,45014,45015
1rjdA	334	80.22	c.66.1.37	97558
1j1xH	114	80.59	b.1.1.1	77063
2rk5A	87	81.92		
1eswA	500	82.92	c.1.8.1	59500
2oxoA	103	84.82		
1zu1A	127	85.51		
1yfsA	465	87.11	a.203.1.1,d.104.1.1	123088,123089
3cngA	189	89.96