# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ocvA 125 2.803 d.17.4.3 86810 1t95A 240 7.171 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1x2iA 75 7.408 a.60.2.5 121641 2ej9A 237 7.787 1mw5A 187 8.263 d.259.1.1 91477 1yc5A 246 11.00 c.31.1.5 122910 1zybA 232 11.10 a.4.5.4,b.82.3.2 125815,125816 1ohpA 125 12.91 d.17.4.3 118702 1tuhA 156 13.30 d.17.4.11 107345 1vqzA 341 16.62 d.224.1.3,d.104.1.3 120426,120427 1lj2A 110 16.81 h.1.13.2 73926 1omrA 201 17.38 a.39.1.5 93349 2d69A 430 17.42 c.1.14.1,d.58.9.1 131292,131293 2yruA 118 19.32 1wveC 80 19.94 a.3.1.1 121335 1jr5A 90 20.16 a.150.1.1 67113 2mbrA 340 20.16 d.145.1.2,d.146.1.1 41749,41762 1vzyA 291 20.44 d.193.1.1,g.81.1.1 114042,114043 1g8iA 190 20.66 a.39.1.5 60363 2f46A 156 21.24 2a15A 139 21.45 d.17.4.3 125973 2i0xA 85 21.63 1j5sA 463 24.33 c.1.9.8 71580 1n81A 186 24.45 a.185.1.1 85388 1uxyA 340 25.08 d.145.1.2,d.146.1.1 41748,41761 2i66A 262 27.92 1uxy 340 28.31 2c0rA 362 28.95 c.67.1.4 129604 1p9qC 256 32.01 a.5.8.1,d.235.1.2,d.58.11.3 104093,104094,104095 1r1tA 122 32.07 a.4.5.5 104769 1fm2B 520 32.47 2zc3A 168 32.58 1qgoA 264 33.26 c.92.1.2 35596 1ma3A 253 33.98 c.31.1.5 78883 1wwhA 119 34.10 d.58.7.1 121358 2f3nA 76 34.16 a.60.1.2 132885 1mzhA 225 34.89 c.1.10.1 79698 2cfxA 144 36.39 a.4.5.32,d.58.4.2 130395,130396 2qkmB 266 36.74 1sfxA 109 37.74 a.4.5.50 105505 1yh3A 256 38.17 1alvA 173 38.54 a.39.1.8 17370 1s1eA 224 39.25 a.39.1.5 112007 2a8eA 220 39.35 d.296.1.1 126397 2ekcA 262 39.41 1mn8A 100 40.24 a.61.1.6 79318 2bh9A 489 42.49 1x19A 359 43.18 1tm9A 137 44.88 a.225.1.1 107150 2i6eA 301 45.34 1zbmA 280 46.42 c.94.1.1 124858 1vq0A 302 46.45 d.193.1.1,g.81.1.1 114000,114001 2dbbA 151 47.99 1lm5A 214 48.09 d.211.2.1 74029 1smtA 122 48.95 a.4.5.5 16109 1tuzA 118 49.23 a.39.1.7 112670 1cc8A 73 52.58 d.58.17.1 39343 2iw1A 374 52.78 c.87.1.8 137738 1oiaA 95 53.35 d.58.7.1 87051 1g0oA 283 53.36 c.2.1.2 60181 1fmcA 255 53.63 c.2.1.2 29856 2zadA 345 54.24 2c07A 285 54.71 c.2.1.2 129577 1gdvA 85 55.38 a.3.1.1 60458 2f1fA 164 56.40 d.58.18.6,d.58.18.6 132760,132761 1kk8B 139 57.76 a.39.1.5 77430 2bv5A 282 58.49 1ja9A 274 58.66 c.2.1.2 62817 2aj0A 71 60.92 3bs3A 76 60.95 1rroA 108 63.21 a.39.1.4 17195 2yqcA 486 66.05 1wi6A 88 67.62 d.58.7.1 120974 2afwA 329 68.68 c.56.5.8 126707 1pulA 125 69.79 a.39.1.11 118730 2dsjA 423 69.98 2ofkA 183 70.58 2cveA 191 71.00 d.14.1.11,d.58.11.2 130869,130870 1vraA 208 73.00 2hc5A 117 73.10 1oywA 523 74.30 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1rec 201 74.32 4cpvA 108 75.41 a.39.1.4 17198 1vl8A 267 76.95 c.2.1.2 108733 1mw7A 240 77.62 e.39.1.1 79557 2oieA 111 77.86 a.204.1.2 139092 2ph3A 245 78.14 1s6cA 183 78.53 a.39.1.5 98594 2f06A 144 78.64 d.58.18.11,d.58.18.11 132652,132653 1j24A 143 78.89 c.52.1.20 84008 1dkmA 410 79.02 c.60.1.2 34000 2dr1A 386 79.75 1r1uA 106 80.41 a.4.5.5 104771 2yweA 600 82.06 2i7aA 174 82.50 2d9kA 75 82.88 1or0B 528 83.29 2dkzA 84 84.48 2z2mA 168 84.99 1diiC 80 85.07 a.3.1.1 15925 1i58A 189 85.95 d.122.1.3 61773 2rg8A 165 86.62 1l6wA 220 86.64 c.1.10.1 73632 1pvaA 110 86.71 a.39.1.4 17207 2ilrA 264 87.08 2bo5A 120 88.47