# List of top-scoring protein chains for T0475.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2geyA	158	0.000257		
1ohsA	125	0.001154	d.17.4.3	118706
1ohpA	125	0.001396	d.17.4.3	118702
1tuhA	156	0.001593	d.17.4.11	107345
1buqA	125	0.001610	d.17.4.3	38111
1ocvA	125	0.001611	d.17.4.3	86810
1iskA	125	0.001902	d.17.4.3	38109
8choA	125	0.002228	d.17.4.3	38108
1ogzA	125	0.004064	d.17.4.3	92976
2gexA	152	0.01032		
3b7cA	122	0.01170		
1nu3A	149	0.01331	d.17.4.8	86170
1nwwA	149	0.01331	d.17.4.8	86306
1ohoA	131	0.01889	d.17.4.3	118701
2pzvA	131	0.02228		
1w6yA	131	0.02308	d.17.4.3	120678
1gs3A	131	0.02708	d.17.4.3	76327
1ea2A	131	0.03089	d.17.4.3	64860
1c7hA	131	0.03278	d.17.4.3	38117
1oh0A	131	0.03649	d.17.4.3	87004
1dmqA	131	0.03731	d.17.4.3	38116
1e97A	131	0.03994	d.17.4.3	64803
1cqsA	131	0.04410	d.17.4.3	83165
1dmmA	131	0.04622	d.17.4.3	38114
1dmnA	131	0.04727	d.17.4.3	38115
1k41A	131	0.07314	d.17.4.3	77252
1w02A	131	0.09744	d.17.4.3	108981
1w00A	131	0.1154	d.17.4.3	120554
1vzzA	131	0.1176	d.17.4.3	108977
3cu3A	172	0.1371		
1w01A	131	0.1493	d.17.4.3	108979
2gxfA	142	0.1758		
3b8lA	163	0.2965		
2a15A	139	0.4333	d.17.4.3	125973
2ux0A	143	0.4931		
1s5aA	150	0.6133	d.17.4.10	98525
2bngA	149	0.6758		
1hkxA	147	1.034	d.17.4.7	83567
1z1sA	163	5.077		
1sjwA	144	8.090	d.17.4.9	98899
2f99A	153	9.077		
2rgqA	144	18.48		
1m98A	317	25.62	a.175.1.1,d.17.4.6	78866,78867
2hd9A	145	33.44		
3c8nA	356	57.09		
1v71A	323	65.45	c.79.1.1	119859
3bxrA	99	79.01		
2r4fA	441	81.52		
1dqaA	467	83.79	d.58.20.1,d.179.1.1	39364,42585
1jkgB	250	86.61	d.17.4.2	66796