# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1nwwA	149	5.59e-13	d.17.4.8	86306
2geyA	158	3.13e-12		
2bngA	149	2.20e-11		
1sjwA	144	5.71e-11	d.17.4.9	98899
1ohpA	125	7.35e-11	d.17.4.3	118702
1tuhA	156	1.00e-10	d.17.4.11	107345
1ocvA	125	6.30e-10	d.17.4.3	86810
1ea2A	131	7.72e-10	d.17.4.3	64860
1s5aA	150	1.57e-09	d.17.4.10	98525
1buqA	125	1.89e-09	d.17.4.3	38111
1opy	131	2.02e-08		
1oh0A	131	2.39e-08	d.17.4.3	87004
1dmmA	131	6.54e-08	d.17.4.3	38114
2ux0A	143	1.14e-07		
3cu3A	172	3.39e-06		
2gxfA	142	1.68e-05		
3bb9A	148	2.14e-05		
3b7cA	122	4.08e-05		
2a15A	139	0.000308	d.17.4.3	125973
3cnxA	170	0.000594		
1m98A	317	0.001053	a.175.1.1,d.17.4.6	78866,78867
1hkxA	147	0.001225	d.17.4.7	83567
2imjA	166	0.001446		
2chcA	170	0.003097		
2rfrA	155	0.008135		
2f86B	143	0.02717		
2r4iA	123	0.03296		
1tp6A	128	0.08883	d.17.4.12	107184
3blzA	128	1.387		
2rgqA	144	1.787		
2cw9A	194	5.389	d.17.4.13	130920
2owpA	129	5.581		
2ifuA	307	11.75		
2i9wA	184	17.66		
2nwbA	400	19.61		
2sttA	96	19.62	a.4.5.21	16163
1zx2A	147	23.18		
1vqqA	646	25.54	d.17.4.5,d.175.1.1,e.3.1.1	114009,114010,114011
2yyvA	227	29.10		
3bczA	293	29.90		
2bs6A	90	31.67		
3cetA	334	31.94		
1bc8C	93	33.13	a.4.5.21	16168
1fliA	98	40.49	a.4.5.21	16160
2g8oA	264	44.92	d.117.1.1	134779
1gvjA	146	45.21	a.4.5.21	90525
2g8mA	264	45.24		
1qqeA	292	46.06	a.118.8.1	19210
2aucA	126	49.99		
1jkgB	250	51.88	d.17.4.2	66796
1nh1A	330	55.62	e.45.1.1	91871
1awcA	110	58.10	a.4.5.21	16167
2z0jA	237	60.92		
1rkiA	102	62.72	d.308.1.2	118776
1duxC	94	65.20	a.4.5.21	16170
2aehA	369	65.89	a.11.2.1,b.55.1.5,d.15.1.4	126625,126626,126627
2o3bB	136	67.67	d.221.1.1	138902
1o13A	136	69.20	c.55.5.1	80762
1bv8A	138	69.37	b.2.4.1	22430
2nx2A	181	71.22		
1bm4A	32	73.57	j.47.1.1	46325
2czrA	226	77.00		
1nx8A	273	77.09	b.82.2.8	86374
1tuzA	118	77.27	a.39.1.7	112670
4cpvA	108	79.42	a.39.1.4	17198
1utyA	187	83.49	b.147.1.1	108036