# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1nwwA	149	4.45e-11	d.17.4.8	86306
2geyA	158	2.45e-10		
2bngA	149	8.19e-10		
1sjwA	144	2.44e-09	d.17.4.9	98899
1ohpA	125	4.39e-09	d.17.4.3	118702
1tuhA	156	1.03e-08	d.17.4.11	107345
1buqA	125	1.31e-08	d.17.4.3	38111
1s5aA	150	1.76e-08	d.17.4.10	98525
1ocvA	125	3.15e-08	d.17.4.3	86810
1ea2A	131	3.39e-08	d.17.4.3	64860
1opy	131	4.43e-07		
1oh0A	131	6.26e-07	d.17.4.3	87004
2ux0A	143	2.59e-06		
1dmmA	131	2.68e-06	d.17.4.3	38114
3cu3A	172	4.27e-05		
3bb9A	148	6.33e-05		
2gxfA	142	8.48e-05		
3b7cA	122	0.000400		
1hkxA	147	0.001401	d.17.4.7	83567
3cnxA	170	0.002985		
2imjA	166	0.004976		
1m98A	317	0.005744	a.175.1.1,d.17.4.6	78866,78867
2a15A	139	0.006508	d.17.4.3	125973
2chcA	170	0.007315		
2f86B	143	0.01316		
2rfrA	155	0.02306		
2r4iA	123	0.05838		
1tp6A	128	0.3017	d.17.4.12	107184
3blzA	128	0.6264		
2rgqA	144	2.514		
2owpA	129	6.081		
1utyA	187	9.371	b.147.1.1	108036
2cw9A	194	13.49	d.17.4.13	130920
1o13A	136	24.50	c.55.5.1	80762
1jkgB	250	24.96	d.17.4.2	66796
1zx2A	147	25.01		
1tuzA	118	30.37	a.39.1.7	112670
1bv8A	138	30.72	b.2.4.1	22430
2i9wA	184	35.54		
2sttA	96	36.83	a.4.5.21	16163
1bc8C	93	40.66	a.4.5.21	16168
2z0jA	237	42.53		
1eo1A	124	43.92	c.55.5.1	33739
1ounA	127	44.60	d.17.4.2	38090
2ifuA	307	45.72		
1g0dA	695	46.62	b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4	60166,60167,60168,60169
2bs6A	90	46.74		
2aucA	126	47.51		
1vqqA	646	50.62	d.17.4.5,d.175.1.1,e.3.1.1	114009,114010,114011
2yyvA	227	53.03		
1b9vA	390	54.36	b.68.1.1	27603
2o3bB	136	56.92	d.221.1.1	138902
1fliA	98	58.25	a.4.5.21	16160
2i79A	172	68.02		
1qqeA	292	71.32	a.118.8.1	19210
2admA	421	73.10	c.66.1.27,d.287.1.1	111611,111612
1j57A	143	76.27	d.221.1.1	77079
1gvjA	146	78.08	a.4.5.21	90525
2nn6H	308	80.93		
2c5kT	95	82.94		
2hqbA	296	85.83