# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1nwwA	149	1.62e-11	d.17.4.8	86306
2bngA	149	1.42e-10		
2geyA	158	1.68e-10		
1ohpA	125	4.50e-10	d.17.4.3	118702
1sjwA	144	1.24e-09	d.17.4.9	98899
1tuhA	156	3.16e-09	d.17.4.11	107345
1ea2A	131	6.64e-09	d.17.4.3	64860
1ocvA	125	6.74e-09	d.17.4.3	86810
1s5aA	150	8.40e-09	d.17.4.10	98525
1buqA	125	1.41e-08	d.17.4.3	38111
1opy	131	7.65e-08		
1oh0A	131	1.48e-07	d.17.4.3	87004
1dmmA	131	2.55e-07	d.17.4.3	38114
2ux0A	143	1.35e-06		
3cu3A	172	1.33e-05		
2gxfA	142	6.99e-05		
3bb9A	148	0.000105		
3b7cA	122	0.000105		
2a15A	139	0.000858	d.17.4.3	125973
3cnxA	170	0.001270		
1hkxA	147	0.001938	d.17.4.7	83567
1m98A	317	0.004592	a.175.1.1,d.17.4.6	78866,78867
2chcA	170	0.004809		
2imjA	166	0.005779		
2f86B	143	0.01807		
2rfrA	155	0.02403		
2r4iA	123	0.04430		
1tp6A	128	0.2006	d.17.4.12	107184
2rgqA	144	0.7075		
3blzA	128	2.029		
2owpA	129	3.341		
2g8mA	264	8.766		
2cw9A	194	9.397	d.17.4.13	130920
2g8oA	264	10.12	d.117.1.1	134779
1utyA	187	12.81	b.147.1.1	108036
1rpmA	278	14.33	c.45.1.2	32679
2sttA	96	16.78	a.4.5.21	16163
2i9wA	184	19.69		
2ifuA	307	19.76		
2ooqA	286	21.26		
1b02A	279	22.09	d.117.1.1	41035
1bc8C	93	24.15	a.4.5.21	16168
2aucA	126	25.39		
1bv8A	138	25.92	b.2.4.1	22430
1o13A	136	27.62	c.55.5.1	80762
1vqqA	646	28.93	d.17.4.5,d.175.1.1,e.3.1.1	114009,114010,114011
1ev5A	264	29.21	d.117.1.1	40935
1ypvA	313	30.28		
1bkpA	278	33.77	d.117.1.1	41029
2yyvA	227	34.54		
2je6I	251	35.97		
4cpvA	108	36.71	a.39.1.4	17198
2bs6A	90	37.13		
2jpnA	79	37.40		
1jkgB	250	42.89	d.17.4.2	66796
1zx2A	147	45.62		
1axwA	265	46.36	d.117.1.1	40938
1iirA	415	47.36	c.87.1.5	62453
1larA	575	53.00	c.45.1.2,c.45.1.2	32693,32694
1wchA	315	53.53	c.45.1.2	114508
1awcA	110	54.07	a.4.5.21	16167
5palA	109	55.29	a.39.1.4	17215
2nwbA	400	55.51		
1gvjA	146	57.67	a.4.5.21	90525
2c5kT	95	59.51		
1nh1A	330	63.33	e.45.1.1	91871
2g50A	530	64.86	b.58.1.1,c.1.12.1,c.49.1.1	134618,134619,134620
2ozeA	298	67.93		
1hvyA	288	68.91	d.117.1.1	41049
1ngkA	128	70.29	a.1.1.1	85673
2psbA	320	70.97		
2z0jA	237	75.76		
1aiqA	264	80.39	d.117.1.1	40967
2o3bB	136	82.24	d.221.1.1	138902
1uhnA	189	83.22	a.39.1.5	99399
1fliA	98	86.55	a.4.5.21	16160
1wlzA	105	86.89	a.39.1.7	121024
2bjdA	101	87.28		
1duxC	94	87.97	a.4.5.21	16170
1kf6D	119	88.43	f.21.2.2	72400