# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1nwwA	149	1.77e-11	d.17.4.8	86306
2geyA	158	1.39e-10		
2bngA	149	2.46e-10		
1ohpA	125	6.99e-10	d.17.4.3	118702
1sjwA	144	7.80e-10	d.17.4.9	98899
1tuhA	156	3.08e-09	d.17.4.11	107345
1ea2A	131	8.94e-09	d.17.4.3	64860
1ocvA	125	9.34e-09	d.17.4.3	86810
1buqA	125	1.14e-08	d.17.4.3	38111
1s5aA	150	1.25e-08	d.17.4.10	98525
1opy	131	1.33e-07		
1oh0A	131	2.12e-07	d.17.4.3	87004
1dmmA	131	3.68e-07	d.17.4.3	38114
2ux0A	143	1.43e-06		
3cu3A	172	1.53e-05		
2gxfA	142	6.65e-05		
3b7cA	122	7.80e-05		
3bb9A	148	0.000123		
2a15A	139	0.001434	d.17.4.3	125973
3cnxA	170	0.003097		
1m98A	317	0.004545	a.175.1.1,d.17.4.6	78866,78867
1hkxA	147	0.006117	d.17.4.7	83567
2chcA	170	0.007138		
2imjA	166	0.008627		
2rfrA	155	0.01872		
2f86B	143	0.02660		
2r4iA	123	0.09670		
1tp6A	128	0.3360	d.17.4.12	107184
2rgqA	144	1.156		
2owpA	129	3.515		
3blzA	128	3.609		
2cw9A	194	7.252	d.17.4.13	130920
2sttA	96	15.99	a.4.5.21	16163
2aucA	126	17.46		
1utyA	187	20.57	b.147.1.1	108036
2ifuA	307	20.85		
1bc8C	93	21.28	a.4.5.21	16168
1vqqA	646	25.22	d.17.4.5,d.175.1.1,e.3.1.1	114009,114010,114011
1jkgB	250	25.49	d.17.4.2	66796
2i9wA	184	27.35		
2nwbA	400	34.68		
2yyvA	227	38.79		
2jpnA	79	39.28		
4cpvA	108	39.31	a.39.1.4	17198
2g8mA	264	41.51		
1o13A	136	41.70	c.55.5.1	80762
1iirA	415	43.37	c.87.1.5	62453
1rpmA	278	45.37	c.45.1.2	32679
2c5kT	95	46.14		
1bv8A	138	48.12	b.2.4.1	22430
5palA	109	48.41	a.39.1.4	17215
1gvjA	146	48.45	a.4.5.21	90525
1zx2A	147	50.01		
1awcA	110	50.46	a.4.5.21	16167
2g8oA	264	50.97	d.117.1.1	134779
2ooqA	286	52.92		
2o3bB	136	60.97	d.221.1.1	138902
2z0jA	237	61.27		
1uhnA	189	65.16	a.39.1.5	99399
2bs6A	90	66.71		
1nh1A	330	71.01	e.45.1.1	91871
1duxC	94	71.22	a.4.5.21	16170
1fliA	98	72.96	a.4.5.21	16160
1ngkA	128	74.50	a.1.1.1	85673
1kf6D	119	78.73	f.21.2.2	72400
2nogA	173	81.30		
1nx8A	273	83.91	b.82.2.8	86374
1bm4A	32	86.87	j.47.1.1	46325
1tuzA	118	87.10	a.39.1.7	112670
2ozeA	298	88.28		
1b02A	279	89.83	d.117.1.1	41035