# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1nwwA	149	4.19e-12	d.17.4.8	86306
2geyA	158	4.38e-11		
2bngA	149	1.18e-10		
1sjwA	144	2.64e-10	d.17.4.9	98899
1ohpA	125	2.98e-10	d.17.4.3	118702
1tuhA	156	8.78e-10	d.17.4.11	107345
1ea2A	131	4.31e-09	d.17.4.3	64860
1s5aA	150	4.88e-09	d.17.4.10	98525
1ocvA	125	5.38e-09	d.17.4.3	86810
1buqA	125	6.54e-09	d.17.4.3	38111
1opy	131	6.27e-08		
1oh0A	131	1.18e-07	d.17.4.3	87004
1dmmA	131	1.73e-07	d.17.4.3	38114
2ux0A	143	9.12e-07		
3cu3A	172	1.01e-05		
3b7cA	122	5.16e-05		
2gxfA	142	7.31e-05		
3bb9A	148	9.57e-05		
2a15A	139	0.000643	d.17.4.3	125973
3cnxA	170	0.002055		
1m98A	317	0.003579	a.175.1.1,d.17.4.6	78866,78867
1hkxA	147	0.003923	d.17.4.7	83567
2chcA	170	0.004988		
2imjA	166	0.008193		
2rfrA	155	0.01536		
2f86B	143	0.02065		
2r4iA	123	0.1056		
1tp6A	128	0.3230	d.17.4.12	107184
2rgqA	144	1.187		
3blzA	128	3.737		
2owpA	129	4.305		
2cw9A	194	15.12	d.17.4.13	130920
2sttA	96	15.16	a.4.5.21	16163
1bc8C	93	19.80	a.4.5.21	16168
1utyA	187	21.55	b.147.1.1	108036
2ifuA	307	23.94		
1jkgB	250	24.77	d.17.4.2	66796
4cpvA	108	25.16	a.39.1.4	17198
2aucA	126	25.85		
2g8mA	264	26.07		
2yyvA	227	27.83		
2g8oA	264	30.89	d.117.1.1	134779
1iirA	415	33.20	c.87.1.5	62453
1bv8A	138	36.11	b.2.4.1	22430
1o13A	136	37.31	c.55.5.1	80762
1rpmA	278	37.46	c.45.1.2	32679
5palA	109	39.96	a.39.1.4	17215
1zx2A	147	41.94		
1awcA	110	42.00	a.4.5.21	16167
2ooqA	286	43.82		
2nwbA	400	43.88		
1vqqA	646	46.15	d.17.4.5,d.175.1.1,e.3.1.1	114009,114010,114011
2i9wA	184	46.69		
1gvjA	146	46.97	a.4.5.21	90525
2jpnA	79	48.67		
2c5kT	95	49.70		
1duxC	94	53.85	a.4.5.21	16170
2z0jA	237	54.29		
1b02A	279	54.40	d.117.1.1	41035
1fliA	98	57.73	a.4.5.21	16160
2bs6A	90	58.46		
1nh1A	330	65.34	e.45.1.1	91871
2o3bB	136	65.54	d.221.1.1	138902
2bjdA	101	67.87		
1wlzA	105	70.91	a.39.1.7	121024
1ev5A	264	78.66	d.117.1.1	40935
1tuzA	118	78.89	a.39.1.7	112670
1ypvA	313	80.70		
1uhnA	189	81.42	a.39.1.5	99399
1bkpA	278	85.94	d.117.1.1	41029
2nx2A	181	89.45