# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1nwwA	149	1.00e-09	d.17.4.8	86306
2bngA	149	4.77e-09		
2geyA	158	6.68e-09		
1buqA	125	1.89e-08	d.17.4.3	38111
1ohpA	125	2.24e-08	d.17.4.3	118702
1tuhA	156	8.46e-08	d.17.4.11	107345
1ocvA	125	1.93e-07	d.17.4.3	86810
1sjwA	144	2.34e-07	d.17.4.9	98899
1ea2A	131	2.42e-07	d.17.4.3	64860
1s5aA	150	4.79e-07	d.17.4.10	98525
1oh0A	131	1.45e-06	d.17.4.3	87004
1opy	131	2.26e-06		
1dmmA	131	6.71e-06	d.17.4.3	38114
2ux0A	143	2.18e-05		
3cu3A	172	3.26e-05		
2gxfA	142	0.000202		
3bb9A	148	0.000672		
3b7cA	122	0.001358		
3cnxA	170	0.001948		
2a15A	139	0.003514	d.17.4.3	125973
1hkxA	147	0.003652	d.17.4.7	83567
2chcA	170	0.01907		
1m98A	317	0.03364	a.175.1.1,d.17.4.6	78866,78867
2imjA	166	0.03874		
2f86B	143	0.04810		
2rfrA	155	0.1162		
2r4iA	123	0.1345		
1tp6A	128	1.091	d.17.4.12	107184
2rgqA	144	4.152		
2owpA	129	12.05		
2cw9A	194	13.57	d.17.4.13	130920
3blzA	128	14.53		
1zx2A	147	32.09		
2c5kT	95	33.97		
1jkgB	250	33.97	d.17.4.2	66796
1vqqA	646	39.74	d.17.4.5,d.175.1.1,e.3.1.1	114009,114010,114011
1bv8A	138	41.50	b.2.4.1	22430
1fliA	98	41.97	a.4.5.21	16160
1wchA	315	43.12	c.45.1.2	114508
1qqeA	292	43.82	a.118.8.1	19210
2sttA	96	45.39	a.4.5.21	16163
2ifuA	307	47.17		
2avkA	136	49.69		
1lhpA	312	60.38	c.72.1.5	77960
1bc8C	93	60.55	a.4.5.21	16168
2ejnA	153	61.23	a.101.1.1,a.101.1.1	132279,132280
1l2lA	457	65.55	c.72.1.3	77656
1gvjA	146	68.76	a.4.5.21	90525
2i79A	172	70.81		
1wlzA	105	74.47	a.39.1.7	121024
1awcA	110	88.06	a.4.5.21	16167
1mwsA	646	89.00	d.17.4.5,d.175.1.1,e.3.1.1	79592,79593,79594