# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1nwwA	149	4.13e-12	d.17.4.8	86306
2geyA	158	1.28e-11		
2bngA	149	7.55e-11		
1sjwA	144	1.45e-10	d.17.4.9	98899
1ohpA	125	3.09e-10	d.17.4.3	118702
1tuhA	156	7.61e-10	d.17.4.11	107345
1s5aA	150	3.19e-09	d.17.4.10	98525
1ocvA	125	3.87e-09	d.17.4.3	86810
1ea2A	131	4.75e-09	d.17.4.3	64860
1buqA	125	1.13e-08	d.17.4.3	38111
1opy	131	6.87e-08		
1oh0A	131	8.80e-08	d.17.4.3	87004
1dmmA	131	2.73e-07	d.17.4.3	38114
2ux0A	143	5.63e-07		
3cu3A	172	2.02e-05		
2gxfA	142	2.76e-05		
3bb9A	148	3.87e-05		
3b7cA	122	7.31e-05		
2a15A	139	0.001143	d.17.4.3	125973
3cnxA	170	0.001368		
2imjA	166	0.002840		
2chcA	170	0.003865		
1hkxA	147	0.004317	d.17.4.7	83567
1m98A	317	0.005454	a.175.1.1,d.17.4.6	78866,78867
2f86B	143	0.01986		
2rfrA	155	0.02450		
2r4iA	123	0.09446		
1tp6A	128	0.1876	d.17.4.12	107184
2rgqA	144	1.985		
3blzA	128	4.472		
2owpA	129	6.256		
2cw9A	194	13.69	d.17.4.13	130920
2ifuA	307	19.39		
2aucA	126	23.44		
2i9wA	184	27.52		
1jkgB	250	28.03	d.17.4.2	66796
1utyA	187	32.17	b.147.1.1	108036
2g8oA	264	38.97	d.117.1.1	134779
2nwbA	400	40.80		
2bs6A	90	44.50		
1bv8A	138	46.78	b.2.4.1	22430
2sttA	96	46.85	a.4.5.21	16163
1bc8C	93	47.89	a.4.5.21	16168
2g8mA	264	48.81		
1vqqA	646	50.20	d.17.4.5,d.175.1.1,e.3.1.1	114009,114010,114011
1zx2A	147	54.56		
2yyvA	227	57.09		
3bczA	293	59.34		
1o13A	136	65.28	c.55.5.1	80762
1kf6D	119	66.62	f.21.2.2	72400
1gvjA	146	70.26	a.4.5.21	90525
2czrA	226	77.87		
1b02A	279	78.22	d.117.1.1	41035
1f6dA	376	84.16	c.87.1.3	35467
1duxC	94	85.33	a.4.5.21	16170
1bm4A	32	89.25	j.47.1.1	46325
1fliA	98	89.47	a.4.5.21	16160