# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1nwwA	149	2.36e-11	d.17.4.8	86306
2geyA	158	1.28e-10		
2bngA	149	7.45e-10		
1sjwA	144	1.36e-09	d.17.4.9	98899
1ohpA	125	2.78e-09	d.17.4.3	118702
1tuhA	156	5.65e-09	d.17.4.11	107345
1buqA	125	8.39e-09	d.17.4.3	38111
1s5aA	150	1.35e-08	d.17.4.10	98525
1ea2A	131	2.00e-08	d.17.4.3	64860
1ocvA	125	2.35e-08	d.17.4.3	86810
1opy	131	2.28e-07		
1oh0A	131	4.50e-07	d.17.4.3	87004
2ux0A	143	9.85e-07		
1dmmA	131	9.91e-07	d.17.4.3	38114
3cu3A	172	3.19e-05		
3bb9A	148	8.43e-05		
2gxfA	142	9.06e-05		
3b7cA	122	0.000262		
1hkxA	147	0.002070	d.17.4.7	83567
2a15A	139	0.002154	d.17.4.3	125973
3cnxA	170	0.002306		
2imjA	166	0.007580		
2chcA	170	0.008031		
1m98A	317	0.01420	a.175.1.1,d.17.4.6	78866,78867
2rfrA	155	0.01767		
2f86B	143	0.02392		
2r4iA	123	0.1350		
1tp6A	128	0.4725	d.17.4.12	107184
3blzA	128	0.9862		
2rgqA	144	2.365		
2cw9A	194	7.951	d.17.4.13	130920
2owpA	129	8.045		
1utyA	187	12.84	b.147.1.1	108036
1jkgB	250	22.13	d.17.4.2	66796
2ifuA	307	28.22		
2i9wA	184	33.39		
1zx2A	147	34.00		
2sttA	96	36.08	a.4.5.21	16163
1bv8A	138	42.93	b.2.4.1	22430
1vqqA	646	47.77	d.17.4.5,d.175.1.1,e.3.1.1	114009,114010,114011
2bs6A	90	50.04		
4cpvA	108	51.00	a.39.1.4	17198
2aucA	126	53.50		
1fliA	98	55.09	a.4.5.21	16160
1bc8C	93	57.74	a.4.5.21	16168
2nwbA	400	65.63		
2yyvA	227	67.15		
2g8mA	264	74.30		
2g8oA	264	81.23	d.117.1.1	134779
1tuzA	118	82.81	a.39.1.7	112670
2c5kT	95	84.36		
2o3bB	136	86.85	d.221.1.1	138902
1gvjA	146	89.79	a.4.5.21	90525