# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1nwwA	149	2.05e-11	d.17.4.8	86306
2geyA	158	2.75e-10		
2bngA	149	8.95e-10		
1sjwA	144	2.54e-09	d.17.4.9	98899
1ohpA	125	2.55e-09	d.17.4.3	118702
1buqA	125	6.15e-09	d.17.4.3	38111
1tuhA	156	8.45e-09	d.17.4.11	107345
1s5aA	150	1.38e-08	d.17.4.10	98525
1ocvA	125	1.97e-08	d.17.4.3	86810
1ea2A	131	2.92e-08	d.17.4.3	64860
1opy	131	3.93e-07		
1oh0A	131	4.56e-07	d.17.4.3	87004
1dmmA	131	1.12e-06	d.17.4.3	38114
2ux0A	143	2.37e-06		
3cu3A	172	3.35e-05		
2gxfA	142	0.000115		
3bb9A	148	0.000130		
3b7cA	122	0.000286		
1hkxA	147	0.002305	d.17.4.7	83567
2a15A	139	0.002787	d.17.4.3	125973
3cnxA	170	0.003389		
1m98A	317	0.007982	a.175.1.1,d.17.4.6	78866,78867
2chcA	170	0.008742		
2imjA	166	0.009539		
2rfrA	155	0.01858		
2f86B	143	0.01897		
2r4iA	123	0.1366		
1tp6A	128	0.5921	d.17.4.12	107184
2rgqA	144	2.034		
3blzA	128	2.345		
2owpA	129	8.031		
2cw9A	194	16.07	d.17.4.13	130920
2aucA	126	20.61		
2yyvA	227	20.78		
1jkgB	250	21.79	d.17.4.2	66796
1utyA	187	22.98	b.147.1.1	108036
2sttA	96	23.23	a.4.5.21	16163
1bv8A	138	34.73	b.2.4.1	22430
4cpvA	108	35.01	a.39.1.4	17198
1vqqA	646	37.21	d.17.4.5,d.175.1.1,e.3.1.1	114009,114010,114011
2ifuA	307	37.43		
2bs6A	90	38.18		
2z0jA	237	38.26		
1zx2A	147	40.06		
2g8mA	264	42.14		
2g8oA	264	44.70	d.117.1.1	134779
1bc8C	93	55.17	a.4.5.21	16168
2nwbA	400	55.80		
1gvjA	146	70.08	a.4.5.21	90525
5palA	109	70.51	a.39.1.4	17215
2i9wA	184	73.87		
1rkiA	102	74.44	d.308.1.2	118776
3cetA	334	74.94		
2nogA	173	75.66		
1ypvA	313	83.22		
1b02A	279	88.36	d.117.1.1	41035