# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1nwwA	149	4.22e-08	d.17.4.8	86306
1ohpA	125	2.54e-07	d.17.4.3	118702
2bngA	149	2.98e-07		
1buqA	125	4.04e-07	d.17.4.3	38111
2geyA	158	4.66e-07		
1tuhA	156	8.08e-07	d.17.4.11	107345
1ocvA	125	1.14e-06	d.17.4.3	86810
1sjwA	144	1.43e-06	d.17.4.9	98899
1ea2A	131	5.03e-06	d.17.4.3	64860
1s5aA	150	8.33e-06	d.17.4.10	98525
1oh0A	131	1.19e-05	d.17.4.3	87004
1opy	131	3.16e-05		
1dmmA	131	3.18e-05	d.17.4.3	38114
2ux0A	143	0.000263		
3cu3A	172	0.001010		
2gxfA	142	0.005128		
3bb9A	148	0.008871		
2a15A	139	0.01072	d.17.4.3	125973
3cnxA	170	0.01202		
3b7cA	122	0.01987		
1hkxA	147	0.02626	d.17.4.7	83567
2f86B	143	0.1620		
2imjA	166	0.2099		
2rfrA	155	0.3292		
2chcA	170	0.3560		
1m98A	317	0.4018	a.175.1.1,d.17.4.6	78866,78867
2r4iA	123	0.6447		
1tp6A	128	11.81	d.17.4.12	107184
3blzA	128	20.32		
1jkgB	250	26.81	d.17.4.2	66796
1rpmA	278	36.56	c.45.1.2	32679
2cw9A	194	39.84	d.17.4.13	130920
2ooqA	286	51.74		
2owpA	129	53.09		
2nogA	173	57.74		
1fliA	98	60.78	a.4.5.21	16160
1qksA	567	63.47	a.3.1.2,b.70.2.1	15951,27710
2g8mA	264	70.24		
2g8oA	264	70.38	d.117.1.1	134779
2sttA	96	70.50	a.4.5.21	16163
1ypvA	313	72.45		
1xjuA	163	73.18	d.2.1.3	115394
1zx2A	147	82.25