# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1nwwA	149	2.88e-09	d.17.4.8	86306
2bngA	149	1.85e-08		
1ohpA	125	2.44e-08	d.17.4.3	118702
1buqA	125	3.65e-08	d.17.4.3	38111
2geyA	158	5.73e-08		
1tuhA	156	7.32e-08	d.17.4.11	107345
1sjwA	144	1.10e-07	d.17.4.9	98899
1ocvA	125	1.20e-07	d.17.4.3	86810
1ea2A	131	1.74e-07	d.17.4.3	64860
1s5aA	150	5.17e-07	d.17.4.10	98525
1oh0A	131	1.32e-06	d.17.4.3	87004
1dmmA	131	2.74e-06	d.17.4.3	38114
1opy	131	2.82e-06		
2ux0A	143	1.70e-05		
3cu3A	172	0.000313		
3bb9A	148	0.000670		
2gxfA	142	0.000743		
3b7cA	122	0.001170		
2a15A	139	0.001241	d.17.4.3	125973
3cnxA	170	0.005637		
1hkxA	147	0.005844	d.17.4.7	83567
1m98A	317	0.02197	a.175.1.1,d.17.4.6	78866,78867
2f86B	143	0.02212		
2imjA	166	0.03515		
2chcA	170	0.06477		
2rfrA	155	0.09277		
2r4iA	123	0.1527		
1tp6A	128	0.5854	d.17.4.12	107184
3blzA	128	6.635		
2rgqA	144	7.004		
2owpA	129	12.90		
1jkgB	250	13.67	d.17.4.2	66796
1zx2A	147	14.03		
2cw9A	194	16.99	d.17.4.13	130920
2nogA	173	26.26		
1ounA	127	28.56	d.17.4.2	38090
2qz7A	194	48.58		
1v30A	124	56.90	d.269.1.1	113496
1zo2A	129	61.22		
2avkA	136	63.94		
1askA	127	66.91	d.17.4.2	38094
2i9wA	184	73.00		
1wchA	315	75.55	c.45.1.2	114508
1vqqA	646	75.67	d.17.4.5,d.175.1.1,e.3.1.1	114009,114010,114011
2ejxA	139	76.40		
1q7lA	198	76.67	c.56.5.4	96044
2vh3A	113	76.71		
2ifuA	307	76.91		
1qksA	567	80.98	a.3.1.2,b.70.2.1	15951,27710