# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1buqA 125 3.29e-05 d.17.4.3 38111 1ea2A 131 0.000104 d.17.4.3 64860 2geyA 158 0.000110 1ocvA 125 0.000122 d.17.4.3 86810 2bngA 149 0.000130 1tuhA 156 0.000232 d.17.4.11 107345 1ohpA 125 0.000292 d.17.4.3 118702 1oh0A 131 0.000368 d.17.4.3 87004 1nwwA 149 0.000482 d.17.4.8 86306 1opy 131 0.000925 1dmmA 131 0.001188 d.17.4.3 38114 3cu3A 172 0.004134 1s5aA 150 0.007851 d.17.4.10 98525 2ux0A 143 0.01750 2a15A 139 0.01794 d.17.4.3 125973 2gxfA 142 0.03613 1m98A 317 0.04831 a.175.1.1,d.17.4.6 78866,78867 3cnxA 170 0.06080 1tp6A 128 0.09555 d.17.4.12 107184 3bb9A 148 0.1135 3b7cA 122 0.4233 1sjwA 144 0.5430 d.17.4.9 98899 1hkxA 147 0.8207 d.17.4.7 83567 2imjA 166 0.9324 2owpA 129 1.071 2chcA 170 1.546 1zx2A 147 3.701 2r4iA 123 7.030 1gybA 125 8.915 d.17.4.2 70744 1zo2A 129 9.605 1gy7A 125 10.26 d.17.4.2 70738 2b1xB 172 10.31 d.17.4.4 127677 1jkgA 140 12.86 d.17.4.2 66795 1mwsA 646 13.08 d.17.4.5,d.175.1.1,e.3.1.1 79592,79593,79594 1idpA 172 14.85 d.17.4.1 83685 1vqqA 646 14.86 d.17.4.5,d.175.1.1,e.3.1.1 114009,114010,114011 1vl2A 421 16.19 c.26.2.1,d.210.1.1 108708,108709 2rgqA 144 16.46 1korA 400 19.45 c.26.2.1,d.210.1.1 72824,72825 2fjbA 643 21.48 1gy6A 127 24.11 d.17.4.2 70736 1askA 127 25.63 d.17.4.2 38094 2f86B 143 25.70 3blzA 128 26.60 2cw9A 194 27.64 d.17.4.13 130920 1jnrA 643 32.20 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 3bczA 293 32.25 1obrA 326 32.54 c.56.5.2 33828 1oqvA 192 33.84 d.24.1.2 87320 2c6cA 707 35.34 a.48.2.1,c.8.4.1,c.56.5.5 129989,129990,129991 2ootA 709 38.04 a.48.2.1,c.8.4.1,c.56.5.5 139176,139177,139178 1ar0A 127 38.17 d.17.4.2 38092 1uliB 187 38.78 d.17.4.4 107923 1qd9A 124 42.58 d.79.1.1 39758 2hgsA 474 42.92 c.30.1.4,d.142.1.6 31722,75997 1x0oA 119 42.99 3bhxA 709 45.27 1ounA 127 47.96 d.17.4.2 38090 1u55A 188 49.46 d.278.1.1 107677 1bxeA 113 51.98 d.55.1.1 38898 1of5B 184 52.50 d.17.4.2 86934 1dixA 208 52.57 d.124.1.1 41122 1i4jA 110 52.69 d.55.1.1 76734 2j6aA 141 52.77 1lbvA 252 55.70 e.7.1.1 73813 1i74A 309 63.42 c.107.1.1 61867 1ka1A 357 64.46 e.7.1.1 68369 1kf6A 602 65.21 a.7.3.1,c.3.1.4,d.168.1.1 72394,72395,72396 1jb2A 127 68.49 d.17.4.2 71624 2bkyX 89 69.21 d.68.6.1 128717 1bncA 449 70.92 b.84.2.1,c.30.1.1,d.142.1.2 28236,31643,41488 1p7gA 222 72.99 a.2.11.1,d.44.1.1 94223,94224 2h9uA 102 73.04 1d2eA 397 73.33 b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 3bi1A 709 73.39 1cqmA 101 76.51 d.58.14.1 39321 1nfjA 89 78.22 d.68.6.1 91866 1gv3A 248 78.53 a.2.11.1,d.44.1.1 70585,70586 2b02A 119 82.48 2qg8A 163 83.18 1vdwA 254 84.10 e.7.1.1 100569 1h8lA 380 84.39 b.3.2.1,c.56.5.1 65737,65738 2or4A 709 84.87 a.48.2.1,c.8.4.1,c.56.5.5 139258,139259,139260 3stdA 165 86.13 d.17.4.1 38073