# List of top-scoring protein chains for T0475.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ocvA 125 2.80e-09 d.17.4.3 86810 1buqA 125 2.93e-09 d.17.4.3 38111 1iskA 125 3.92e-09 d.17.4.3 38109 1ohpA 125 4.19e-09 d.17.4.3 118702 1ohsA 125 4.33e-09 d.17.4.3 118706 8choA 125 4.43e-09 d.17.4.3 38108 1ogzA 125 1.16e-08 d.17.4.3 92976 2geyA 158 1.50e-08 1dmmA 131 1.52e-08 d.17.4.3 38114 1dmnA 131 1.63e-08 d.17.4.3 38115 1e97A 131 1.64e-08 d.17.4.3 64803 1oh0A 131 2.05e-08 d.17.4.3 87004 1ea2A 131 2.06e-08 d.17.4.3 64860 1w6yA 131 2.15e-08 d.17.4.3 120678 1dmqA 131 2.18e-08 d.17.4.3 38116 2pzvA 131 2.30e-08 1ohoA 131 2.32e-08 d.17.4.3 118701 1c7hA 131 2.40e-08 d.17.4.3 38117 1gs3A 131 3.24e-08 d.17.4.3 76327 1k41A 131 3.68e-08 d.17.4.3 77252 1cqsA 131 4.59e-08 d.17.4.3 83165 1nwwA 149 5.00e-08 d.17.4.8 86306 1nu3A 149 5.00e-08 d.17.4.8 86170 1w01A 131 5.13e-08 d.17.4.3 108979 2gexA 152 6.57e-08 1w00A 131 7.48e-08 d.17.4.3 120554 1w02A 131 7.57e-08 d.17.4.3 108981 1vzzA 131 7.99e-08 d.17.4.3 108977 1tuhA 156 9.89e-08 d.17.4.11 107345 1z1sA 163 1.37e-07 2imjA 166 1.93e-07 1s5aA 150 3.53e-07 d.17.4.10 98525 2a15A 139 6.67e-07 d.17.4.3 125973 2bngA 149 8.96e-07 2ux0A 143 1.99e-05 1hkxA 147 3.75e-05 d.17.4.7 83567 3b8lA 163 0.000104 3b7cA 122 0.000158 1sjwA 144 0.000206 d.17.4.9 98899 2gxfA 142 0.000352 2f99A 153 0.001082 3cu3A 172 0.001542 1m98A 317 0.005485 a.175.1.1,d.17.4.6 78866,78867 3cnxA 170 0.007292 2chcA 170 0.007353 2rfrA 155 0.02493 2f86B 143 0.05791 2rgqA 144 0.07887 1tp6A 128 0.2668 d.17.4.12 107184 2rcdA 129 0.3594 2r4iA 123 1.568 1jkgB 250 3.084 d.17.4.2 66796 1zo2A 129 4.132 2owpA 129 4.353 1wqlB 186 10.26 d.17.4.4 121172 1gy5A 127 10.27 d.17.4.2 70734 1u5oA 127 11.02 d.17.4.2 113044 1qmaA 126 11.20 d.17.4.2 38096 1gy6A 127 11.42 d.17.4.2 70736 1l6jA 425 11.77 a.20.1.2,d.92.1.11,g.14.1.2,g.14.1.2,g.14.1.2 73619,73620,73621,73622,73623 1askA 127 12.18 d.17.4.2 38094 3bb9A 148 15.64 1ar0A 127 17.38 d.17.4.2 38092 3blzA 128 17.72 1iayA 428 19.34 c.67.1.4 62130 1uliB 187 19.42 d.17.4.4 107923 1jb5A 127 24.46 d.17.4.2 71628 1jb2A 127 27.50 d.17.4.2 71624 2f83A 625 29.68 1jb4A 127 33.33 d.17.4.2 71626 1zx2A 147 38.71 2qiyA 154 38.77 2piiA 112 43.47 d.58.5.1 39071 2cbnA 306 50.31 d.157.1.7 130191 2fk6A 320 59.47 d.157.1.7 133646 1z2cA 193 61.33 c.37.1.8 124376 1y44A 320 65.18 d.157.1.7 122608 2j4tA 144 65.74 2jq5A 128 67.44 1dpfA 180 71.92 c.37.1.8 32046 1ow3B 193 79.81 c.37.1.8 87486 1cc0A 190 81.39 c.37.1.8 32050 1lb1B 192 88.34 c.37.1.8 73786 1x86B 196 89.14 c.37.1.8 109506