# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1oh0A	131	3.40e-16	d.17.4.3	87004
1nwwA	149	4.86e-16	d.17.4.8	86306
2bngA	149	5.71e-16		
1dmmA	131	6.69e-16	d.17.4.3	38114
2a15A	139	2.37e-15	d.17.4.3	125973
1ohpA	125	4.23e-15	d.17.4.3	118702
2geyA	158	8.50e-15		
1s5aA	150	1.13e-14	d.17.4.10	98525
1sjwA	144	1.21e-14	d.17.4.9	98899
1tuhA	156	1.15e-13	d.17.4.11	107345
2gxfA	142	1.09e-11		
2rfrA	155	4.20e-09		
3cu3A	172	1.43e-08		
3bb9A	148	1.60e-08		
3cnxA	170	2.10e-08		
2chcA	170	2.62e-08		
1hkxA	147	3.63e-08	d.17.4.7	83567
2imjA	166	3.84e-08		
2ux0A	143	1.03e-07		
3b7cA	122	1.49e-07		
2r4iA	123	1.64e-07		
2f86B	143	1.55e-06		
3blzA	128	8.31e-06		
2owpA	129	9.83e-05		
1tp6A	128	0.000131	d.17.4.12	107184
1m98A	317	0.000191	a.175.1.1,d.17.4.6	78866,78867
2rgqA	144	0.000500		
2b1xB	172	0.1018	d.17.4.4	127677
1idpA	172	0.1123	d.17.4.1	83685
2qiyA	154	0.7170		
1uliB	187	1.470	d.17.4.4	107923
1gybA	125	1.783	d.17.4.2	70744
1zo2A	129	2.031		
1gy7A	125	2.168	d.17.4.2	70738
2gbwB	174	2.257		
3bczA	293	2.500		
2bmoB	194	3.749	d.17.4.4	128806
2fxtA	192	5.566		
2z10A	194	6.146		
1jkgA	140	6.735	d.17.4.2	66795
1of5B	184	7.915	d.17.4.2	86934
1gy6A	127	8.420	d.17.4.2	70736
1zx2A	147	8.844		
2b02A	119	11.02		
1o7nB	194	11.73	d.17.4.4	81164
2qguA	211	15.04		
2vi7A	177	17.59		
1yreA	197	20.58	d.108.1.1	123919
1i52A	236	21.40	c.68.1.13	61767
2a22A	215	25.75	d.159.1.7	126025
1tuaA	191	25.94	d.51.1.1,d.51.1.1	107321,107322
2cw9A	194	26.60	d.17.4.13	130920
2dkoA	146	36.06		
1w24A	182	39.18	d.159.1.7	120579
1c30B	382	46.68	c.8.3.1,c.23.16.1	30736,31413
2pd8A	149	46.89		
1x0oA	119	49.92		
1qtnA	164	51.46	c.17.1.1	30999
1v71A	323	54.22	c.79.1.1	119859
2ckfB	174	54.28		
2i62A	265	54.36		
1nx8A	273	60.67	b.82.2.8	86374
2pdrA	149	67.14		
1aipA	405	67.95	b.43.3.1,b.44.1.1,c.37.1.8	25697,25737,32132
2og5A	357	71.07		
1a04A	215	72.61	a.4.6.2,c.23.1.1	16234,31089
1nmsA	249	74.18	c.17.1.1	85879
2qh5A	308	75.20		
1p7tA	731	76.22	c.1.13.1	94319
2cvjA	180	77.86		
2d69A	430	79.95	c.1.14.1,d.58.9.1	131292,131293
2cmgA	262	81.01		
1q40B	219	84.31	d.17.4.2	95771
1q42A	201	89.05	d.17.4.2	95776
1b63A	333	89.71	d.14.1.3,d.122.1.2	37566,41107