# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1nwwA	149	3.42e-16	d.17.4.8	86306
2bngA	149	6.39e-16		
1oh0A	131	9.42e-16	d.17.4.3	87004
1dmmA	131	1.46e-15	d.17.4.3	38114
1sjwA	144	3.73e-15	d.17.4.9	98899
2geyA	158	3.77e-15		
1ohpA	125	6.27e-15	d.17.4.3	118702
1s5aA	150	1.11e-14	d.17.4.10	98525
2a15A	139	1.47e-14	d.17.4.3	125973
1tuhA	156	6.24e-14	d.17.4.11	107345
2gxfA	142	2.72e-11		
2rfrA	155	2.97e-09		
2chcA	170	6.08e-09		
3cu3A	172	1.18e-08		
3bb9A	148	1.53e-08		
2imjA	166	2.08e-08		
1hkxA	147	2.27e-08	d.17.4.7	83567
3cnxA	170	3.66e-08		
2ux0A	143	6.57e-08		
2r4iA	123	7.69e-08		
3b7cA	122	8.31e-08		
2f86B	143	2.08e-07		
3blzA	128	3.03e-06		
2owpA	129	8.81e-05		
2rgqA	144	0.000155		
1m98A	317	0.000522	a.175.1.1,d.17.4.6	78866,78867
1tp6A	128	0.000633	d.17.4.12	107184
1idpA	172	0.1401	d.17.4.1	83685
2qiyA	154	0.2934		
1zo2A	129	0.3275		
2b1xB	172	0.3864	d.17.4.4	127677
2gbwB	174	0.7090		
1gybA	125	0.8039	d.17.4.2	70744
1jkgA	140	0.8042	d.17.4.2	66795
1zx2A	147	0.8636		
1gy6A	127	0.9947	d.17.4.2	70736
1gy7A	125	1.285	d.17.4.2	70738
2bmoB	194	2.821	d.17.4.4	128806
2z10A	194	3.718		
1uliB	187	3.809	d.17.4.4	107923
2fxtA	192	6.140		
1of5B	184	8.121	d.17.4.2	86934
1o7nB	194	9.398	d.17.4.4	81164
2qguA	211	14.15		
3bczA	293	15.92		
2b02A	119	24.15		
1tuaA	191	26.25	d.51.1.1,d.51.1.1	107321,107322
2cw9A	194	26.91	d.17.4.13	130920
2a22A	215	31.50	d.159.1.7	126025
1yreA	197	31.99	d.108.1.1	123919
2vi7A	177	34.30		
2i2qA	137	40.35		
1w24A	182	41.36	d.159.1.7	120579
2rghA	571	49.99		
1x0oA	119	50.19		
2pdrA	149	57.88		
1a19A	90	57.96	c.9.1.1	30831
2pd8A	149	58.61		
2cmgA	262	63.36		
1of5A	221	67.64	d.17.4.2	86933
2dkoA	146	69.04		
1df7A	159	70.77	c.71.1.1	34885
2ckfB	174	79.39		
1v71A	323	79.54	c.79.1.1	119859
2d69A	430	81.52	c.1.14.1,d.58.9.1	131292,131293
2qf2A	624	85.12		
1faaA	124	89.56	c.47.1.1	32738