# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2bngA	149	9.27e-16		
1nwwA	149	1.10e-15	d.17.4.8	86306
1oh0A	131	2.79e-15	d.17.4.3	87004
1dmmA	131	4.06e-15	d.17.4.3	38114
1ohpA	125	1.54e-14	d.17.4.3	118702
2geyA	158	2.47e-14		
1sjwA	144	2.53e-14	d.17.4.9	98899
2a15A	139	3.13e-14	d.17.4.3	125973
1s5aA	150	4.32e-14	d.17.4.10	98525
1tuhA	156	1.75e-13	d.17.4.11	107345
2gxfA	142	5.09e-11		
2rfrA	155	9.14e-09		
3cu3A	172	1.06e-08		
2chcA	170	2.56e-08		
3cnxA	170	2.65e-08		
3bb9A	148	3.12e-08		
1hkxA	147	4.79e-08	d.17.4.7	83567
2r4iA	123	5.42e-08		
2ux0A	143	7.58e-08		
2imjA	166	9.86e-08		
3b7cA	122	1.09e-07		
2f86B	143	1.11e-06		
3blzA	128	1.74e-05		
2owpA	129	5.75e-05		
1m98A	317	0.000186	a.175.1.1,d.17.4.6	78866,78867
1tp6A	128	0.000215	d.17.4.12	107184
2rgqA	144	0.000452		
1idpA	172	0.1362	d.17.4.1	83685
2b1xB	172	0.2161	d.17.4.4	127677
1zo2A	129	0.7264		
2gbwB	174	0.7950		
2qiyA	154	1.098		
1gybA	125	1.159	d.17.4.2	70744
1gy7A	125	1.274	d.17.4.2	70738
2bmoB	194	2.477	d.17.4.4	128806
1jkgA	140	2.922	d.17.4.2	66795
1gy6A	127	3.658	d.17.4.2	70736
2a22A	215	4.559	d.159.1.7	126025
1uliB	187	4.904	d.17.4.4	107923
3bczA	293	5.799		
2qguA	211	6.947		
1zx2A	147	7.553		
1o7nB	194	7.901	d.17.4.4	81164
1yreA	197	8.531	d.108.1.1	123919
1of5B	184	9.541	d.17.4.2	86934
1w24A	182	10.16	d.159.1.7	120579
2z10A	194	10.87		
2fxtA	192	16.41		
2cmgA	262	16.83		
1v71A	323	18.77	c.79.1.1	119859
2b02A	119	25.88		
2vi7A	177	30.54		
1tuaA	191	37.26	d.51.1.1,d.51.1.1	107321,107322
2cw9A	194	38.18	d.17.4.13	130920
1z2wA	192	43.00	d.159.1.7	124390
1faaA	124	45.63	c.47.1.1	32738
2dxnA	274	51.46		
1erw	105	53.33		
1a5zA	319	58.81	c.2.1.5,d.162.1.1	30181,42148
1rl0A	255	59.69	d.165.1.1	111859
1i52A	236	61.90	c.68.1.13	61767
2ckfB	174	63.48		
1x0oA	119	66.56		
2djkA	133	67.29	c.47.1.2	131548
2pd8A	149	69.36		
1hc7A	477	74.99	c.51.1.1,d.104.1.1,d.68.5.1	60938,60939,60940
1p7tA	731	76.92	c.1.13.1	94319
1erv	105	79.17		
1kb9B	352	83.41	d.185.1.1,d.185.1.1	77313,77314
2pdrA	149	84.32		
1q42A	201	85.93	d.17.4.2	95776
1yr0A	175	87.30	d.108.1.1	123905
2g4rA	160	87.35