# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2bngA	149	1.88e-17		
1nwwA	149	2.72e-17	d.17.4.8	86306
1oh0A	131	3.68e-17	d.17.4.3	87004
1dmmA	131	6.10e-17	d.17.4.3	38114
1ohpA	125	3.44e-16	d.17.4.3	118702
1sjwA	144	4.56e-16	d.17.4.9	98899
2geyA	158	5.62e-16		
2a15A	139	6.66e-16	d.17.4.3	125973
1s5aA	150	8.10e-16	d.17.4.10	98525
1tuhA	156	4.67e-15	d.17.4.11	107345
2gxfA	142	5.49e-12		
2rfrA	155	1.84e-09		
3cu3A	172	2.37e-09		
2chcA	170	5.66e-09		
3cnxA	170	6.69e-09		
3bb9A	148	7.78e-09		
1hkxA	147	1.65e-08	d.17.4.7	83567
3b7cA	122	2.62e-08		
2imjA	166	2.75e-08		
2r4iA	123	3.07e-08		
2ux0A	143	4.11e-08		
2f86B	143	3.28e-07		
3blzA	128	8.05e-06		
2owpA	129	3.70e-05		
1m98A	317	8.20e-05	a.175.1.1,d.17.4.6	78866,78867
1tp6A	128	0.000136	d.17.4.12	107184
2rgqA	144	0.000341		
1idpA	172	0.1563	d.17.4.1	83685
2b1xB	172	0.2281	d.17.4.4	127677
2qiyA	154	0.8301		
1zo2A	129	1.543		
2gbwB	174	1.984		
1gybA	125	2.035	d.17.4.2	70744
1gy7A	125	2.659	d.17.4.2	70738
2bmoB	194	3.252	d.17.4.4	128806
3bczA	293	3.806		
1uliB	187	3.838	d.17.4.4	107923
1jkgA	140	4.235	d.17.4.2	66795
2a22A	215	8.517	d.159.1.7	126025
1gy6A	127	9.295	d.17.4.2	70736
1yreA	197	11.50	d.108.1.1	123919
1o7nB	194	12.03	d.17.4.4	81164
1zx2A	147	12.69		
1v71A	323	13.47	c.79.1.1	119859
2fxtA	192	13.96		
2qguA	211	14.37		
2z10A	194	14.52		
1of5B	184	15.01	d.17.4.2	86934
1w24A	182	16.25	d.159.1.7	120579
2cmgA	262	18.09		
2vi7A	177	21.59		
2b02A	119	24.95		
1faaA	124	26.94	c.47.1.1	32738
1i52A	236	33.03	c.68.1.13	61767
1kb9B	352	36.96	d.185.1.1,d.185.1.1	77313,77314
1erw	105	38.67		
2djkA	133	43.38	c.47.1.2	131548
1a5zA	319	53.75	c.2.1.5,d.162.1.1	30181,42148
1erv	105	54.37		
1p7tA	731	58.71	c.1.13.1	94319
2pd8A	149	62.65		
1tuaA	191	65.08	d.51.1.1,d.51.1.1	107321,107322
2cw9A	194	68.37	d.17.4.13	130920
1f9mA	112	68.94	c.47.1.1	32736
1hc7A	477	70.49	c.51.1.1,d.104.1.1,d.68.5.1	60938,60939,60940
1z2wA	192	75.62	d.159.1.7	124390
2oqrA	230	76.44		
1q42A	201	77.89	d.17.4.2	95776
1x0oA	119	79.09		
1gh2A	107	79.54	c.47.1.1	60515
1p0hA	318	80.01	d.108.1.1	93866
1a04A	215	82.30	a.4.6.2,c.23.1.1	16234,31089
1rl0A	255	84.46	d.165.1.1	111859
2pdrA	149	84.53		
1qhxA	178	84.73	c.37.1.3	31936
2dxnA	274	87.45		
1mszA	86	88.51	d.68.7.1	79428