# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2bngA	149	7.75e-16		
1nwwA	149	8.02e-16	d.17.4.8	86306
1oh0A	131	1.33e-15	d.17.4.3	87004
1dmmA	131	1.90e-15	d.17.4.3	38114
2geyA	158	6.05e-15		
1ohpA	125	9.03e-15	d.17.4.3	118702
1sjwA	144	1.63e-14	d.17.4.9	98899
2a15A	139	1.72e-14	d.17.4.3	125973
1s5aA	150	2.01e-14	d.17.4.10	98525
1tuhA	156	1.42e-13	d.17.4.11	107345
2gxfA	142	2.85e-11		
2rfrA	155	3.73e-09		
3cu3A	172	9.80e-09		
2chcA	170	1.20e-08		
3bb9A	148	1.81e-08		
3cnxA	170	1.86e-08		
1hkxA	147	1.87e-08	d.17.4.7	83567
2imjA	166	2.88e-08		
2r4iA	123	3.33e-08		
2ux0A	143	4.22e-08		
3b7cA	122	4.36e-08		
2f86B	143	8.20e-07		
3blzA	128	1.15e-05		
2owpA	129	5.00e-05		
1tp6A	128	0.000102	d.17.4.12	107184
2rgqA	144	0.000173		
1m98A	317	0.000448	a.175.1.1,d.17.4.6	78866,78867
1idpA	172	0.03870	d.17.4.1	83685
2b1xB	172	0.07000	d.17.4.4	127677
2gbwB	174	0.5821		
1zo2A	129	0.7323		
2qiyA	154	0.8630		
1gybA	125	1.049	d.17.4.2	70744
1gy7A	125	1.078	d.17.4.2	70738
1gy6A	127	2.523	d.17.4.2	70736
1uliB	187	2.790	d.17.4.4	107923
1jkgA	140	3.272	d.17.4.2	66795
2qguA	211	3.442		
2bmoB	194	3.537	d.17.4.4	128806
2a22A	215	4.197	d.159.1.7	126025
1zx2A	147	4.645		
2z10A	194	5.128		
1o7nB	194	6.988	d.17.4.4	81164
1w24A	182	9.123	d.159.1.7	120579
2fxtA	192	11.75		
1of5B	184	12.84	d.17.4.2	86934
2b02A	119	20.51		
1yreA	197	21.77	d.108.1.1	123919
2cw9A	194	31.14	d.17.4.13	130920
3bczA	293	36.86		
1qo3C	137	37.05	d.169.1.1	42350
1x0oA	119	37.13		
2ckfB	174	39.58		
1z2wA	192	42.03	d.159.1.7	124390
2vi7A	177	42.13		
2pdrA	149	54.18		
1v71A	323	61.80	c.79.1.1	119859
1faaA	124	63.04	c.47.1.1	32738
2djkA	133	64.26	c.47.1.2	131548
1s95A	333	66.45	d.159.1.3	105375
1tuaA	191	69.19	d.51.1.1,d.51.1.1	107321,107322
1a5zA	319	74.32	c.2.1.5,d.162.1.1	30181,42148
2cmgA	262	78.95		
1qhxA	178	80.47	c.37.1.3	31936
2qh5A	308	84.55		
2bpdA	142	88.43