# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1nwwA 149 1.72e-17 d.17.4.8 86306 2bngA 149 2.63e-17 1oh0A 131 8.66e-17 d.17.4.3 87004 1dmmA 131 1.50e-16 d.17.4.3 38114 2geyA 158 2.81e-16 2a15A 139 5.23e-16 d.17.4.3 125973 1ohpA 125 7.11e-16 d.17.4.3 118702 1sjwA 144 8.63e-16 d.17.4.9 98899 1tuhA 156 2.71e-15 d.17.4.11 107345 1s5aA 150 3.28e-15 d.17.4.10 98525 2gxfA 142 3.76e-13 3cu3A 172 1.44e-10 1hkxA 147 3.18e-10 d.17.4.7 83567 2ux0A 143 8.00e-10 2rfrA 155 1.38e-09 3bb9A 148 2.75e-09 2chcA 170 3.98e-09 3cnxA 170 5.20e-09 2r4iA 123 6.17e-09 3b7cA 122 1.38e-08 2imjA 166 1.37e-07 2f86B 143 1.39e-07 3blzA 128 6.80e-06 1m98A 317 1.29e-05 a.175.1.1,d.17.4.6 78866,78867 2owpA 129 1.87e-05 2rgqA 144 8.01e-05 1tp6A 128 8.79e-05 d.17.4.12 107184 2b1xB 172 0.005339 d.17.4.4 127677 1idpA 172 0.09895 d.17.4.1 83685 2qiyA 154 0.1147 1o7nB 194 0.2879 d.17.4.4 81164 2gbwB 174 0.3406 2bmoB 194 0.6769 d.17.4.4 128806 1gybA 125 0.7131 d.17.4.2 70744 1zo2A 129 0.8065 1uliB 187 1.086 d.17.4.4 107923 1gy7A 125 1.536 d.17.4.2 70738 2a22A 215 1.970 d.159.1.7 126025 1gy6A 127 2.229 d.17.4.2 70736 1xnzA 264 2.806 d.127.1.1 115673 1jkgA 140 2.936 d.17.4.2 66795 1zx2A 147 3.334 2z10A 194 3.896 3cbwA 353 5.483 2pdrA 149 5.996 2qguA 211 6.318 1q74A 303 7.392 c.134.1.1 96019 2fxtA 192 8.776 3bczA 293 9.824 1a5zA 319 10.45 c.2.1.5,d.162.1.1 30181,42148 2pnqA 467 11.88 1of5A 221 15.63 d.17.4.2 86933 1of5B 184 15.89 d.17.4.2 86934 2yxxA 386 17.91 2r7dA 469 18.87 1w24A 182 20.57 d.159.1.7 120579 2pyxA 526 20.77 2olnA 397 21.85 2v95A 371 22.24 3b85A 208 22.30 2b02A 119 22.43 1x0oA 119 25.21 1iq6A 134 26.36 d.38.1.4 76755 1z2wA 192 26.69 d.159.1.7 124390 2vi7A 177 28.67 2e0aA 394 28.75 1gvjA 146 28.99 a.4.5.21 90525 2vhfA 374 29.19 2z3yA 662 29.50 1xkyA 301 31.68 c.1.10.1 122094 2a4dA 160 32.51 d.20.1.1 126152 1zcjA 463 36.74 2pd8A 149 38.19 3bwlA 126 38.38 1yreA 197 38.71 d.108.1.1 123919 1tuaA 191 40.06 d.51.1.1,d.51.1.1 107321,107322 2bo9A 308 41.24 c.56.5.1 128897 1i52A 236 43.24 c.68.1.13 61767 1rl0A 255 43.43 d.165.1.1 111859 2ckfB 174 44.95 1w36C 1122 47.99 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 1s95A 333 48.49 d.159.1.3 105375 1rm6A 769 50.11 d.41.1.1,d.133.1.1 111872,111873 2cw9A 194 50.38 d.17.4.13 130920 2i3oA 516 51.96 d.153.1.6 137027 2dxnA 274 52.40 1wp1A 474 53.46 f.5.1.1 114778 6ldhA 329 58.46 c.2.1.5,d.162.1.1 30161,42128 1qtnA 164 58.93 c.17.1.1 30999 1amuA 563 59.01 e.23.1.1 43351 2hdyA 440 60.00 1p3dA 475 62.20 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 2okxA 956 62.80 2djkA 133 63.30 c.47.1.2 131548 2dkoA 146 67.83 1lycA 343 69.03 a.93.1.1 74344 1yk3A 210 70.16 d.108.1.1 123493 1kb9B 352 71.39 d.185.1.1,d.185.1.1 77313,77314 1c24A 263 72.23 d.127.1.1 41148 1ne7A 289 72.27 c.124.1.1 91833 2z84A 218 72.46 2nycA 144 73.95 d.37.1.1 138812 1nx8A 273 74.30 b.82.2.8 86374 2qddA 378 77.23 1bifA 469 77.32 c.37.1.7,c.60.1.4 31961,34003 2o8nA 265 78.20 2c4eA 302 80.40 2p5qA 170 81.79 1dusA 194 82.18 c.66.1.4 34182 3coxA 507 85.26 c.3.1.2,d.16.1.1 30332,37863 1faaA 124 85.35 c.47.1.1 32738 1ypfA 336 85.76 1q40B 219 86.01 d.17.4.2 95771 1lldA 319 86.27 c.2.1.5,d.162.1.1 30177,42144 1id0A 152 86.66 d.122.1.3 66111