# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1nwwA	149	6.07e-18	d.17.4.8	86306
2bngA	149	9.96e-18		
1oh0A	131	1.09e-17	d.17.4.3	87004
1dmmA	131	2.66e-17	d.17.4.3	38114
1ohpA	125	1.66e-16	d.17.4.3	118702
2a15A	139	2.41e-16	d.17.4.3	125973
2geyA	158	2.49e-16		
1s5aA	150	3.45e-16	d.17.4.10	98525
1sjwA	144	4.49e-16	d.17.4.9	98899
1tuhA	156	4.02e-15	d.17.4.11	107345
2gxfA	142	1.99e-12		
2rfrA	155	3.30e-10		
3cu3A	172	1.42e-09		
3bb9A	148	2.24e-09		
3cnxA	170	2.65e-09		
1hkxA	147	2.67e-09	d.17.4.7	83567
2chcA	170	7.00e-09		
2r4iA	123	8.64e-09		
2ux0A	143	1.48e-08		
2imjA	166	1.91e-08		
3b7cA	122	2.04e-08		
2f86B	143	1.22e-07		
3blzA	128	2.75e-06		
2owpA	129	1.33e-05		
1tp6A	128	0.000130	d.17.4.12	107184
2rgqA	144	0.000187		
1m98A	317	0.000336	a.175.1.1,d.17.4.6	78866,78867
1idpA	172	0.1625	d.17.4.1	83685
2b1xB	172	0.2444	d.17.4.4	127677
2qiyA	154	0.2621		
1zo2A	129	0.5964		
1gybA	125	0.8441	d.17.4.2	70744
2gbwB	174	1.102		
1gy7A	125	1.242	d.17.4.2	70738
1jkgA	140	1.310	d.17.4.2	66795
2fxtA	192	2.007		
1zx2A	147	2.831		
2bmoB	194	3.329	d.17.4.4	128806
1gy6A	127	3.740	d.17.4.2	70736
1uliB	187	5.181	d.17.4.4	107923
1of5B	184	5.885	d.17.4.2	86934
2z10A	194	7.055		
1o7nB	194	8.761	d.17.4.4	81164
2qguA	211	14.66		
3bczA	293	15.10		
2vi7A	177	15.74		
2cw9A	194	22.65	d.17.4.13	130920
1yreA	197	24.50	d.108.1.1	123919
2b02A	119	25.71		
1v71A	323	27.42	c.79.1.1	119859
1x0oA	119	40.73		
2dkoA	146	41.34		
1q40B	219	43.73	d.17.4.2	95771
2a22A	215	44.62	d.159.1.7	126025
2pd8A	149	46.14		
2djkA	133	46.76	c.47.1.2	131548
1tuaA	191	52.42	d.51.1.1,d.51.1.1	107321,107322
1q42A	201	53.05	d.17.4.2	95776
2pdrA	149	63.27		
1qo3C	137	68.55	d.169.1.1	42350
2q3bA	313	71.74		
1faaA	124	74.13	c.47.1.1	32738
2gn0A	342	77.15		
1c30B	382	77.92	c.8.3.1,c.23.16.1	30736,31413
1i52A	236	84.64	c.68.1.13	61767
2cmgA	262	85.55		
1wv9A	94	86.12		
2i2qA	137	89.01