# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1nwwA	149	1.09e-17	d.17.4.8	86306
2bngA	149	2.07e-17		
1oh0A	131	2.08e-17	d.17.4.3	87004
1dmmA	131	5.05e-17	d.17.4.3	38114
2geyA	158	2.19e-16		
1sjwA	144	3.00e-16	d.17.4.9	98899
1ohpA	125	3.65e-16	d.17.4.3	118702
2a15A	139	4.13e-16	d.17.4.3	125973
1s5aA	150	4.18e-16	d.17.4.10	98525
1tuhA	156	4.52e-15	d.17.4.11	107345
2gxfA	142	2.84e-12		
2rfrA	155	3.56e-10		
3cu3A	172	1.91e-09		
3bb9A	148	2.41e-09		
1hkxA	147	3.38e-09	d.17.4.7	83567
2chcA	170	3.60e-09		
3cnxA	170	5.83e-09		
2imjA	166	7.30e-09		
2r4iA	123	1.86e-08		
2ux0A	143	2.13e-08		
3b7cA	122	3.43e-08		
2f86B	143	1.90e-07		
3blzA	128	2.03e-06		
2owpA	129	2.51e-05		
1tp6A	128	0.000151	d.17.4.12	107184
2rgqA	144	0.000152		
1m98A	317	0.000250	a.175.1.1,d.17.4.6	78866,78867
1idpA	172	0.09210	d.17.4.1	83685
2b1xB	172	0.1158	d.17.4.4	127677
2qiyA	154	0.2438		
1zo2A	129	0.4948		
2gbwB	174	0.7530		
1jkgA	140	0.7874	d.17.4.2	66795
1gy7A	125	1.560	d.17.4.2	70738
1gybA	125	1.571	d.17.4.2	70744
1zx2A	147	1.777		
1uliB	187	2.688	d.17.4.4	107923
2bmoB	194	3.527	d.17.4.4	128806
1gy6A	127	3.639	d.17.4.2	70736
2fxtA	192	4.613		
1o7nB	194	8.135	d.17.4.4	81164
1of5B	184	9.104	d.17.4.2	86934
3bczA	293	9.845		
2z10A	194	9.99		
2vi7A	177	15.26		
2b02A	119	15.98		
2cw9A	194	20.50	d.17.4.13	130920
2qguA	211	23.76		
1v71A	323	26.73	c.79.1.1	119859
2cmgA	262	31.21		
1yreA	197	40.53	d.108.1.1	123919
2dkoA	146	42.27		
1tuaA	191	42.28	d.51.1.1,d.51.1.1	107321,107322
1i52A	236	45.33	c.68.1.13	61767
2pdrA	149	47.99		
2pd8A	149	53.58		
1of5A	221	57.25	d.17.4.2	86933
1faaA	124	57.44	c.47.1.1	32738
2djkA	133	63.71	c.47.1.2	131548
2i2qA	137	66.97		
1q40B	219	69.78	d.17.4.2	95771
1x0oA	119	71.98		
2ckfB	174	73.27		
1qtnA	164	87.77	c.17.1.1	30999
2gn0A	342	88.43		
2d69A	430	88.78	c.1.14.1,d.58.9.1	131292,131293