# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1nwwA	149	5.49e-17	d.17.4.8	86306
2bngA	149	1.09e-16		
1oh0A	131	1.26e-16	d.17.4.3	87004
1dmmA	131	2.60e-16	d.17.4.3	38114
2geyA	158	1.21e-15		
1ohpA	125	1.30e-15	d.17.4.3	118702
1sjwA	144	1.80e-15	d.17.4.9	98899
1s5aA	150	2.23e-15	d.17.4.10	98525
2a15A	139	3.18e-15	d.17.4.3	125973
1tuhA	156	2.93e-14	d.17.4.11	107345
2gxfA	142	6.11e-12		
2rfrA	155	1.33e-09		
2chcA	170	4.27e-09		
3cu3A	172	4.67e-09		
1hkxA	147	7.50e-09	d.17.4.7	83567
3bb9A	148	8.28e-09		
3cnxA	170	9.25e-09		
2imjA	166	2.26e-08		
2r4iA	123	2.64e-08		
3b7cA	122	3.44e-08		
2ux0A	143	5.87e-08		
2f86B	143	2.36e-07		
3blzA	128	4.90e-06		
2owpA	129	4.86e-05		
2rgqA	144	0.000157		
1tp6A	128	0.000211	d.17.4.12	107184
1m98A	317	0.000285	a.175.1.1,d.17.4.6	78866,78867
1idpA	172	0.1057	d.17.4.1	83685
2b1xB	172	0.2356	d.17.4.4	127677
2qiyA	154	0.3632		
2gbwB	174	0.5453		
1zo2A	129	0.6896		
1gybA	125	1.026	d.17.4.2	70744
1gy7A	125	1.172	d.17.4.2	70738
1jkgA	140	1.319	d.17.4.2	66795
1zx2A	147	1.831		
1gy6A	127	2.351	d.17.4.2	70736
2bmoB	194	2.747	d.17.4.4	128806
1uliB	187	4.447	d.17.4.4	107923
2fxtA	192	5.765		
3bczA	293	6.129		
2z10A	194	6.353		
1o7nB	194	7.455	d.17.4.4	81164
1of5B	184	9.002	d.17.4.2	86934
2vi7A	177	17.60		
2qguA	211	20.41		
2b02A	119	22.33		
2cw9A	194	34.88	d.17.4.13	130920
1v71A	323	35.26	c.79.1.1	119859
2a22A	215	35.57	d.159.1.7	126025
1yreA	197	36.54	d.108.1.1	123919
2djkA	133	38.59	c.47.1.2	131548
2cmgA	262	40.75		
2dkoA	146	42.88		
1w24A	182	56.16	d.159.1.7	120579
1q40B	219	56.92	d.17.4.2	95771
2ckfB	174	60.62		
1x0oA	119	62.41		
1tuaA	191	63.94	d.51.1.1,d.51.1.1	107321,107322
2pdrA	149	73.12		
2i2qA	137	78.02		
2gn0A	342	78.85		
1faaA	124	79.76	c.47.1.1	32738
1i52A	236	84.94	c.68.1.13	61767
1of5A	221	88.75	d.17.4.2	86933